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Might be a faster alternative to fasttree (looks like it requires aligned sequences)
http://www.biomedcentral.com/1471-2105/14/334
Fastphylo: Fast tools for phylogenetics
"We present fastphylo, a s…
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> > > taxonfixer.fileswap('/Users/ruthdavidson/code/phylogenetics-tools/tests/feefifofum','/Users/ruthdavidson/code/phylogenetics-tools/tests/feefifofumswap','newick')
makes a file feefifofumswap (th…
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- [x] Introduction to Biological Databases
- [x] Introduction to NGS sequencing
- [x] Introduction to sequence alignment
- [x] Introduction to Phylogenetics
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When curating their phylogenies from publications, we could collect their emails and notify the authors that their phylogenies are curated in OT. There could be a module in OT to facilitate this proce…
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Implement serialisation methods for haplotype array to write alignment formats, for easy integration with phylogenetics programs.
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- [x] Cookies
- [ ] Manager
- [ ] DatabaseManagement
- [x] ProjectManagement
- [ ] Orthologs
- [ ] Align
- [x] Blast
- [ ] Genbank
- [x] CompGenetics
- [ ] Phylogenetics
- …
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Hello. This is part of the message provided by the program. I have tried many thinks but nothing appears to work when I want to analyze nt. The aa analysis runs properly. Your comments will be appreci…
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Hi, I'm one of the maintainers of the [Phylogenetics CRAN Task View](https://cran.r-project.org/web/views/Phylogenetics.html), and it's been [brought to our attention](https://github.com/cran-task-vie…
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Hi, I'm one of the maintainers of the [Phylogenetics CRAN Task View](https://cran.r-project.org/web/views/Phylogenetics.html), and it's been [brought to our attention](https://github.com/cran-task-vie…
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Good afternoon,
I am having trouble running MP-EST v 3.0 both on my institution's linux cluster and on the research group's mac. Both times I am able to run the test dataset without any issues. It…