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I have been running planemos tests this morning for some tools (latest planemo version), and for different output formats (png, H5, etc) outputs, when compared by size, I get that planemo detects 0 by…
pcm32 updated
9 months ago
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External workflows, e.g. the once from the training material, should be updated regularly. Or even better should be a linked against the training material. Maybe we can pull them down before running t…
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I have worked on the dev branch to reduce the size of the image a little bit, by removing a few devtools like lynx, nmap and Galaxy core dependencies like rpy2, samtools and so on that are now availab…
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It would be nice if we could check the image before Condor starts up and adds themselves to the cluster.
A few ideas:
* check filesystems
* NFS
* CVMFS
* tmp
* check size of …
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The upload tool in Galaxy fails when running via planemo serve for galaxy branch release_24.0. The upload tool works when using branch release_23.2: `rm -rf /scratch/rico/galaxy; planemo serve --gala…
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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@bgruening How can I add something to dependencies as suggested in the following :
https://github.com/bioconda/bioconda-recipes/pull/46915#issuecomment-2093515652
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Hello,
I am running a Galaxy instance (19.05) on a CentOS 7 system. Since the .venv required by Galaxy 19.05 is python2 based, I am running planemo from a separate .venv with python3 (installation …
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Hello,
I've installed planemo via pip in a virtualenv. I'm trying to test out a tool which has a conda dependency.
```
planemo s
[.........]
ModuleNotFoundError: No module named 'conda'
``…
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Hi, I'm trying to reinstall planemo this way but it fails:
```
root@fc64b8caa435:/galaxy# python3 -m venv planemo
root@fc64b8caa435:/galaxy# . planemo/bin/activate
(planemo) root@fc64b8caa435:/g…