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Hi,
I see that CLAP is designed to run on eukaryote genomes.
How to adapt it to run on bacteria?
I changed `make_annotation.sh` by adding species _escherichia_coli_k_12_ and adjusted ftp site and…
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Like we did for #1.
We are currently waiting for some preliminary data to converge and names to be nominated:
https://twitter.com/armish/status/1183753089637064707
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Hey hii, i like the the mobileOG db and the small script you have given for quick analysis. do u have idea to update this database? will this be maintained going forward?
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Hi,
Thank you for this amazing module, It helped me a lot in learning about plasmids.
I am trying to plot a plasmid map, and have a query regarding the same.
Is there any parameter to rotate or i…
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Is it possible to only download plasmids? NCBI Genome has a plasmid-specific page, but I don't see that option in ncbi-genome-download.
Don't know how easy this is?
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Hello Liz,
Hope you are doing well :) I'm using your latest version (https://github.com/Magdoll/AAV/commit/b7ca1f39b455563f703e1ed8cad7092dc7623610) and I had some questions. I'm quite new to gene th…
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For strain and plasmid, we had to create our own custom models rather than just pointing them to the original protocol buffer `struct`. Should we update the other models to match this format, or shoul…
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#55
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C-SAR halts for cell lines whose name starts with a number at the read_sample_count_matrix.R stage of RCRISPR, as a result of the function read_count_matrix_file() adding an 'X' onto the start of thes…
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In case of missing `translation` qualifier in CDS features, the amino acid sequence is not generated by `interested_gene_generation.pl`.