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## I would like to have the FoldSeek score
## No output. It seem to align the structures but never produces output. It says the files are not created.
## Steps to Reproduce (for bugs)
Run bel…
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Dear philosopher team,
After i ran a LFQ-MBR workflow using fragpipe, and inspected the result: i found a wierd row in the protein.tsv:sp|P27870|VAV_MOUSE P27870 VAV_MOUSE Vav1 845 …
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Hi,
I am processing lots of sequences in a fasta file but esm3-small model failed on the sequence "EHVAATHKTGLDALAELTGAALNSVEKLSELQFQTVRASLEDSTEQGKRVFDARSLHELTALQSEVSQPTEKLVAYGRHLYQIAAGTHAEWRKVAQTRA"…
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Hey, hello! I’m a bit confused about why I’m getting errors even though I’m using the same db file. Could you please help me take a look?
When constructing the index, I used the same db file, and bas…
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Does this tool work for a protein complex?
I have a structure for a heterodimer, but should the submitted sequence include both components?
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Hi!
Great work with FANTASIA! I have been testing it in various scenarios. When applying to metagenomic eukaryotic data, I rather often have incomplete genes predicted (but tool such as AUGUSTUS ma…
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mitochondria large subunit
Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs
-- | -- | -- | -- | --
SPAC1610.02c | mrpl1 | mitochondrial ribosomal prot…
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Hi team,
First of all thank you for making this wonderful program public. I was testing out the program today for the protein part of DiG and followed with 1 of the 6 provided examples. I have two …
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First, thank you for your excellent research.
Based on your research, I attempted to predict protein-ligand structures (a kind of binding mode analysis) using single protein:single ligand combination…