-
#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Miscellaneous`, `Isolated` and `Drug metabolism`.
| Gene| UniProtID| Reaction| GPR|…
-
I have a corpus of ~75,000 abstracts that I want to make a KG out of using OntoGPT. After 4 hours, it only got through 50 documents -- not super promising!
I took a look through the docs to see if …
-
Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
-
So I created a test circuit (zipped) and tested SYNBICT's `features_to_circuits.py` on it, and looked at the differences with what VPR returns (also zipped). For it, I used Cello's most [updated repos…
-
### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
-
#### Current behavior:
60 genes are discovered to be uncorrelated with their corresponding reactions in `Purine metabolism`
| Gene | UniProtID | Reaction | GPR| Correlation | Manually chec…
-
Currently these types are stored as strings inside component. It is better to do this via classes.
-
Hi all,
This is such an awesome review, and i'd love to use it as a basis for teaching, but i've had to jump back-and-forth through sections, as the current structure doesn't flow as naturally for a …
-
Currently we don't differentiate between genes and proteins, we just lump them all under gene. However, most go annotation is at the protein level. When we have a go annotation, and we ask quickgo …
-
COB ‘molecular entity’ definition: "A material entity that consists of two or more atoms that are all connected via covalent bonds such that any atom can be transitively connected with any other atom.…