SD2E SYNBICT issues - Githubissues

SD2E / SYNBICT

Synthetic Biology Curation Tools

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Dependency issues when doing fresh install

#55 zachsents opened 1 year ago
1
Update sequences_to_features.py

#54 JMante1 opened 3 years ago
0
Create python-publish.yml

#53 JMante1 opened 3 years ago
0
Update setup.py

#52 JMante1 opened 3 years ago
0
Update sequences_to_features.py

#51 JMante1 opened 3 years ago
0
Complex interaction issue

#50 benjhatch opened 4 years ago
0
Convert to sbol2

#49 tcmitchell closed 4 years ago
0
Convert to pySBOL2

#48 tcmitchell opened 4 years ago
2
Introduce NotFoundError for backward and forward compatibility

#47 tcmitchell closed 4 years ago
1
Be dynamic about raised exceptions for object not found

#46 tcmitchell opened 4 years ago
0
Label order of inputs & outputs

#45 jakebeal opened 4 years ago
0
Add Tests for Copying ComponentDefinitions Into Annotation Namespace

#44 nroehner opened 4 years ago
0
Make New Copies of Pruned ComponentDefinitions

#43 nroehner opened 4 years ago
0
Add Tests for Annotating Hierarchy of ComponentDefinitions

#42 nroehner opened 4 years ago
0
Large-scale testing

#41 jakebeal opened 4 years ago
0
VPR differences

#40 Fontanapink opened 5 years ago
4
Annotations in multiple levels

#39 Fontanapink opened 5 years ago
0
Remove redundant SequenceAnnotations

#38 cjmyers opened 5 years ago
0
Start testing

#37 jakebeal closed 5 years ago
1
Feature names should be accompanied by role information

#36 jakebeal closed 4 years ago
0
Refactor human input to a separate module

#35 jakebeal opened 5 years ago
0
Accept GFF inputs

#34 jakebeal opened 5 years ago
0
Inexact matches with BLAST

#33 jakebeal opened 5 years ago
0
Remap purl.obolibrary.org CHEBI entries

#32 jakebeal opened 5 years ago
2
Utility for correcting stub labels

#31 jakebeal opened 5 years ago
0
Workflow for review and publication of SynBioHub entries

#30 jakebeal opened 5 years ago
0
Allow SPARQL writing in SD2 SynBioHub deployment

#29 jakebeal closed 4 years ago
1
README

#28 jakebeal closed 4 years ago
0
Accept GenBank/FASTA inputs

#27 jakebeal closed 4 years ago
2
Refactoring

#26 jakebeal closed 5 years ago
2
How does this integrate into the pipeline?

#25 jakebeal opened 5 years ago
0
Figure out sequencing data workflow

#24 jakebeal opened 5 years ago
0
Specification comparison with sequence reads

#23 jakebeal opened 5 years ago
1
Analyze DNA sequencing data for Yeast States strains to determine if gRNA sites are reversed or not.

#22 jakebeal closed 5 years ago
1
Recognize common cases of broken logic connections

#21 jakebeal opened 5 years ago
0
Automatic visualization of circuits

#20 jakebeal closed 4 years ago
1
Error on logic inference for cyclic networks

#19 jakebeal opened 5 years ago
0
Make sure we're labelling device and circuit inputs and outputs

#18 jakebeal opened 5 years ago
0
Generate truth table automatically

#17 jakebeal opened 5 years ago
0
Compute end-to-end logical function for a circuit

#16 jakebeal opened 5 years ago
0
Upload automation

#15 jakebeal opened 5 years ago
0
VisBOL-friendly ModuleDefinitions

#14 jakebeal opened 5 years ago
3
Inference for protein circuits

#13 jakebeal closed 4 years ago
0
Human approval of borderline feature annotations

#12 jakebeal closed 5 years ago
1
Use versioning on sequence feature annotation

#11 jakebeal closed 4 years ago
2
Report sequence feature changes made

#10 jakebeal closed 5 years ago
1
Load in feature annotation list

#9 jakebeal closed 5 years ago
2
BLAST against GenBank?

#8 jakebeal opened 5 years ago
0
Explore other 3rd party feature annotation tools

#7 jakebeal opened 5 years ago
0
Feature annotation via comparison to public SynBioHub

#6 jakebeal opened 5 years ago
0