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The goal is to create a new PubMed version of lensing. The facets should include gene names, protein names, diseases, organisms / species, mutation profiles, etc.
The map view might be useful to tra…
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This issue highlights a need to provide description and provenance for a file used to run the full RTX-KG2 pipeline, `SMPDB_pubmed_IDs.csv`. This file appears to be required for a full workflow run of…
d33bs updated
6 months ago
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There is a PUBMED API, as detailed [here](https://www.ncbi.nlm.nih.gov/books/NBK25499/) (with a weird syntax, but why not), so searching through it is possible, and its free. The list of journal would…
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Dear Katie,
please add the following pigeon breeds:
Taihu Dianzi
Tarim
Parent: Columba livia
Source: PMID:38612286 (https://pubmed.ncbi.nlm.nih.gov/38612286)
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your paper ''Bootstrapping Large Language Models for Radiology Report Generation''is so excellent that I want to reproduce your code from scratch, but I am confused about some of the configs, such as …
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Due to various issues with using the NCBI Entrez API (e.g, #257 ) we could explore using pubmed dumps instead of calling their API.
- the ftp dump page https://www.ncbi.nlm.nih.gov/pmc/tools/ftp/ …
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Freeze-drying can replace cold-chains for transport and storage of fecal microbiome samples - Hanna M Bensch – PeerJ
https://pubmed.ncbi.nlm.nih.gov/35310158/
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PubMed Central provides JATS XML for 4.4 million articles. Not all of these are OpenAccess, so we will start with the ones that are definitely OK to distribute.
I propose to create a live-updating …
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The Europe PubMed Central seems out of sync with NCBI PubMed.
_Example_
Take the PMID `26672148`. This was published in April of 2015.
- The Europe PubMed Central link is [here](http://www.ebi.ac.uk…