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- [ ] Create a product config yaml (Katherine)
- [ ] Submit PR for all Alaska FIM product configs to generate pipeline
- [ ] Create a git branch for this service
- [ ] Create a publishing yaml file
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┆Issue is synchronized with this [Jira Task](https://ucsc-cgl.atlassian.net/browse/ANVIL-569)
┆Issue Type: Task
┆Sprint: Backlog
┆containerName: AnVIL
┆Issue Number: ANVIL-569
┆Epic: QC Pipeline Dev…
kozbo updated
4 years ago
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MSID: 100665
Version: 1
Preprint DOI: https://doi.org/10.1101/2024.10.15.618443
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-h…
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MSID: 100282
Version: 2
Preprint DOI: https://doi.org/10.1101/2024.05.26.596000
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-h…
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MSID: 91722
Version: 3
Preprint DOI: https://doi.org/10.1101/2021.11.16.468866
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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MSID: 96821
Version: 3
Preprint DOI: https://doi.org/10.1101/2023.04.13.536664
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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MSID: 96353
Version: 3
Preprint DOI: https://doi.org/10.1101/2024.01.10.575034
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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Add measure of consanguinity to pipeline for seqr upload -- ROH. This likely belongs in the sample QC pipeline but adding this here for tracking purposes.
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MSID: 99000
Version: 2
Preprint DOI: https://doi.org/10.1101/2024.05.06.592731
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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Use the querying strategy (#772) to get a list of 100k papers and run the pipeline (#770) on them to extract information. QC them (#771) and integrate them in GlyGen.
**Dependencies:**
* #772
* …