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See discussion at https://github.com/qupath/2022-qupath-hackathon/discussions/6
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Hello,
I am hoping to use QuPath interfacing through Python to split the channels of a multispectral image taken from a confocal microscope (e.g. an OIR image taken from a Confocal FV3000 microsco…
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Pete put together the following script for improved QuPath usability: https://gist.github.com/petebankhead/db8548a0112bad089492061bf8046430
Once we figure out next steps for QuPath, we can decide w…
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Dear Community,
I have stitched CODEX images directly after the run and I segemented the image in QuPath. The result is a csv where each row is a cell with multiple columns of Marker Expressions, X…
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In the warpy installer script in lines 210 and 231 a "v" is missing the zip file location path for windows qupath. It says:
`https://github.com/qupath/qupath/releases/download/v${qupath_version}/QuPa…
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**Describe the bug**
When using CellViT to segment some WSIs under 20x magnification scale, the result showed in QuPath is incorrect. However, when under 40x magnification scale, they are correct. Bu…
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See https://forum.image.sc/t/qupath-wrongly-placed-detections-with-out-of-bounds-annotations/100914
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I'm encountering an issue with a Java Virtual Machine (JVM) not running in my Python environment on MacOS. Here are the steps and outputs I've encountered:
When I check my JAVA_HOME variable, it co…
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See https://forum.image.sc/t/qupath-wrongly-placed-detections-with-out-of-bounds-annotations/100914
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The current [tileImport script](https://github.com/andreped/NoCodeSeg/blob/main/source/importTiles.groovy) does not support multiclass tiles, that is produced prediction tiles generated from MIB by a …