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# Li, Dong, Wu et al. 2016
## bioRxiv
*http://doi.org/10.1101/086421*
## Abstract
> Characterizing the binding behaviors of RNA-binding proteins (RBPs) is important for understanding
thei…
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Hi,
I have binding sites of RNA binding proteins (RBP) analyzed from CLIP-seq data, so I want to do the motif enrichment and RBP-regulon prediction, which's used as input for SCENIC. How can I do t…
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First off, thanks for this! Your packages are always really helpful and simple to get working.
This isn't so much a question about your package, but its downstream usage. Do you have a preferred wa…
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https://dx.doi.org/10.1093/nar/gkv1025
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Hi @joschif !
Thank you for this helpful package :) I have a couple of questions!
To start, I will just say - I have already tested a lot of parameters in my multiome dataset and can use the def…
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### Setup
Biopython 1.7.0, Python 2.7.13, and Mac OSX 10.12.6
I am trying to run the MEME parser on a file with protein motifs, but it returns a KeyError with 'X'.
The protein motifs occasional…
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Hi and thanks for developing this very useful tool!
when i tried to use snapatac2.tl.add_cor_scores(network, peak_mat= data) it gives me error of "'NoneType' object has no attribute 'obs_names'"
da…
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Hi,
I have installed the latest version of R Scenic and it seems that it only works for feather v1 version but does not work for feather v2 version (for v2 there is error: "The index column 'featur…
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I an getting error while running step2, runChromVAR om mESC data. I have loaded seurat and signac versions as given in tutorial.
library(Seurat, lib.loc = "~/R/seurat_v4_library")
library(Signac, li…
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Dear Pndo developers,
I was wondering if you could help me to debug my code - I am just following your tutorial and applying it on my data below, however I ran into an error irrespective of which s…