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Hi! Thanks so much for this package.
I am working some rna-seq in the maine species without genome
Your guide presents all downstream analysis example and R scripts with genome index, so how to …
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Hi Chris,
I have been trying to use HISAT-genotype's transcriptome reference graph, but I can not make it work. It keeps getting killed, and generates an error due to certain files that are missing…
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We would like to propose a continuation of the issue [448](https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/448).
#### What are the scientific goals of the analysis?
Batch effects are c…
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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Dear authors of Remora,
I am trying to extract features from basecalls (io_read.seq), reference sequence (io_read.ref_seq) and signals from the io_read object generated from pod5 and bam.
I am c…
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- https://github.com/ENCODE-DCC/rna-seq-pipeline
- https://www.genome.gov/sites/default/files/Multimedia/Slides/ENCODE2016-ResearchAppsUsers/ENCODE2016_strattan_slides.pdf
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…
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Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
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hello!I`m geluanfeng.I have some problems.I have these software installed, but I am getting errors when running them.
“
gelf2022@qmaster:/public252/gelf2022/datas/Zea_mays/Iso-Seq/BGI-Full-Length-RN…