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### Name of the tool
cellranger multi
### Tool homepage
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
### Tool description
is a…
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There are hardcoded paths in the script that point to excel files with a static names. It would be better to give the inputs as arguments.
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Hi,
I have bulk RNA-seq data with one fixed effect (Condiiton) and 2 random effects (patients and batch Info). I am running dream to perform DE analysis.
```
param
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Hi,
I'm using drop 1.3.3 in order to do aberrant expression analysis. However during outrider execution with 2 bam data and 9 external counts, I'm getting the following error:
```
[Tue May 30 16:…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw
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I have an issue loading a previous session from a session xml file.
In a previous session, I changed the track height and set track colors to correspond to their conditions. However, when I reload …
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We would like to propose a continuation of the issue [448](https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/448).
#### What are the scientific goals of the analysis?
Batch effects are c…
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Hi Chris,
I have been trying to use HISAT-genotype's transcriptome reference graph, but I can not make it work. It keeps getting killed, and generates an error due to certain files that are missing…