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It's OK In prod (e.g. here https://docs.lamin.ai/scrna#populate-metadata-registries-based-on-an-artifact)
I just saw it in a notebook from @sunnyosun
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Hi,
I haven't found a similar issue, so apologies if this has already been addressed.
The output of f5c tsv resquiggle appears to add an additional tab at the end of the line in cases where therā¦
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Hello, Dr. He. Sorry to bother you again.
I already knew that SEVtras would work with single cell RNA sequencing data produced by the 10x genomics chromium , which is based on droplet sequencing, butā¦
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Hi, I have multiple bam files (test1.bam test2.bam test3.bam) and the genome fasta and annotation gff.
I want to visualize it with jigv. Could you please post the command for this.
Thanks
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Can it also be used on Oxford Nanopore Techology direct RNA reads?
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Hi, we used the braker3 to predict genes based on the RNA sequencing data and homologous protein. The command is braker.pl --genome=ave.chr.fa --threads 50 -softmasking --rnaseq_sets_ids=rna --rnaseqā¦
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Hi,
I just want to ask , can we use CellBender for Single Cell Gene Expression Flex Fixed RNA Profiling (FRP) seq samples to remove backgroud noise / Ambient RNA / empty Droplets because this seq isā¦
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Dear PBSIM3 maintainers,
I am YU Zhejian from the Zhejiang University-University of Edinburgh Institute. Our group has been using PBSIM1/2/3 to simulate long-read RNA-Seq reads (with [YASIM](https:ā¦
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parasite density by RNA sequencing
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