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Hello,
I have downloaded the scRNA-seq data from the articles for analysis. Some articles only provided TPM data (The TPM data obtained by RSEM is performed on smart-seq2 data), while others only p…
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Hi,
I'm encountering an error during the final step of the SNV calling tutorial for scRNA-Seq data.
Specifically, I get:
```
[2024-05-21 17:09:53,243] INFO Monopogen.py Run LD refinement …
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### Project short name:
MultipotentCellRgenerateAlveoli
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1-oU4…
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Can I used BayesPrism to perform deconvolution on the microarray results (e.g., RMA expression values) by the scRNAseq reference? Suppose I take the relative expressions of RMA values and scRNAseq cou…
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9
- OS name and version (`lsb_release -ds`):
**To Reproduce**
Exact bcbio command you have used:
```
bcbio_nextgen.py /user…
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scRNA-seq analysis tool
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Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
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Thanks you for developing snapATAC tools,
and i have a question:
I followed the "Integrative Analysis of PBMC scATAC-seq and scRNA-seq" pipeline.
1. drawing the prediction score in histogram…
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https://doi.org/10.1101/262501
> Recent advances have enabled gene expression profiling of single cells at lower cost. As more data is produced there is an increasing need to integrate diverse data…
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…