-
Thank you for this cool tool!
I have a question regarding running pathways activity inference for scRNAseq data. I was wondering if it is only appropriate to run mlm method or also ok to run decoup…
-
I am running pySCENIC using the singularity container with scipy (aertslab-pyscenic-scanpy-0.12.1-1.9.1.sif) on a decently large dataset on a HPC, with a 150G memory and 40 cores allocation (salloc -J…
-
### Description of the bug
The error appear when nf-core/scrnaseq is launched with any aligner at the emptydrop step. The pipeline is labelled as completed but with errors as it failed with the outp…
-
hello Alex,
I want to thank you first for your help.
I'm performing STARsolo on pbmc fastq files and I'm using the reference genome from 10*genomics but I have this issu that I can't understand (the…
-
### Description of feature
As discussed in the Slack Channel for scrna-seq on 23rd September 2022:
It will be good to allow --expect-cells in the run with --aligner cellranger option for scrnaseq …
-
-
-
Can I used BayesPrism to perform deconvolution on the microarray results (e.g., RMA expression values) by the scRNAseq reference? Suppose I take the relative expressions of RMA values and scRNAseq cou…
-
Hello,
Thank you so much for developing the fascinating tool, which has been incredibly useful for my research!
I am inferring malignant cell fractions through CNV and then performing deconvolut…
-
Hi,
Is there a vignette somewhere that demonstrates co-embedding scRNA and scATAC? It'd be very helpful if so!!!