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Hi,
I'm working on the integration of human and zebrafish scRNAseq data, refering to this benchmarking strategy and code, I got a overintegrated umap in samap analysis, yet a Unintegrated umap in sc…
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Hi,
I have previously used Xenome to classify mouse reads from human reads from bulk PE RNA-seq data and the tool has worked very well. Now I would like to apply the same technique for scRNA-seq da…
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### Description of feature
Dear scrnaseq team,
Thank you very much for including simpleaf in `scrnaseq`.
Recently, we made major changes to simpleaf, including adding new features and fixing bu…
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
3 months ago
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Thank you for creating such a wonderful tool. Quick question - I read the BayesSapce paper and I am a bit confused - can this tool be used without a reference scRNAseq data. or do I ultimately still n…
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##### Description of the issue
Pulling in and displaying additional data on clusters.
Review data on flybase and suggest what to bring in
Cell counts?
More precise info on cell type
See if can …
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Hi,
I have TILs human scRNAseq data (12 samples) stored as Seurat (V4) object list, 6 samples "Pre" and 6 sample "Post" groups
I projected human scRNAseq onto CD8T_human_ref_v1.rds and CD4T_human_…
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Hi !
I trie to deconvolute and I got this error :
`Error in ST[1, ] : subscript out of bounds`
```
2. SpatialDeconv(ST = st.matrix.data, Ref = Ref, malProp = rep(0, ncol(st.matrix.data…
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Pushing scRNAseq data queries live: Can we do it this week?
* Data live in DB
* [x] pdb-dev has all data (aim to use this for first release of queries)
* [x] pdb-ug loading latest (the …