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Hi, thanks for developing this great tool! I have a question about how the motifs are identified. In the example below, I am wondering why longer motifs, such as `TCCCCTCCCACCCGG` are not identified. …
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Hello
We have done a phased assembly using HiFi data and Improved Phased Assembly (IPA) on a polyploid plant. Then, we did a Omni-C (Dovetail) for the same plant and we got the its short read libra…
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**Description**
I'm running the tutorial and I keep getting the errors at the `prune2df` step like this:
```pytb
Exception: 'KeyError(\'Field "Snora5c" exists 2 times in schema\')'
[...]
Exce…
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Hi, I’m just starting out in this field.
We have an scRNA-seq dataset that includes 438 million paired-end reads (2x150bp) from approximately 8000 cells sourced from tissue samples. We processed the …
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### Setup
Biopython 1.7.0, Python 2.7.13, and Mac OSX 10.12.6
I am trying to run the MEME parser on a file with protein motifs, but it returns a KeyError with 'X'.
The protein motifs occasional…
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**Describe the bug**
When I try to perform Motif.scan_all on HNF1A, I get segmentation fault
**To Reproduce**
Steps to reproduce the behavior:
1. Export whole genome sequence
2. Take MA0046.2 …
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Frequency: Every times
Action:
1. Launch Lomotif
2. Click on Start
3. Select Motif tab on Albums screen
4. Click on Search bar
5. Search for "Love" word
6. Check searched motifs as result and also ch…
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Hey Guys, Cool work its a really nice read. Just a quick comment that I believe the motif scaffolding benchmark as you have implemented does not match the RFDiffusion motifs exactly. The three cases w…
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`teloclip-extract` will write reads with terminal clipped-overhangs to fasta files. To aide in sanity checks we should include some metadata to the fasta header.
Proposed fields:
- Anchor len: how…
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Hello!
I am trying to follow your tutorial [https://kzhang.org/SnapATAC2/version/2.6/tutorials/diff.html] to analyze my dataset. But I got error "RuntimeError: Some worker process has died unexpect…