Adamtaranto teloclip issues

Adamtaranto / teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

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issues

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Execution of Teloclip and input output streams

#26 ufaroooq opened 4 weeks ago
2
Could you explain in detail how to extend reads?

#25 zhangwenda0518 opened 6 months ago
3
Add fuzzy search + code cleanup

#24 Adamtaranto opened 7 months ago
0
Missing isMotifInClip()

#23 Adamtaranto closed 7 months ago
0
Add metadata to extracted overhang reads

#22 Adamtaranto opened 10 months ago
1
Feature: Fuzzy motif search

#21 Adamtaranto opened 10 months ago
0
Confusing about input and output file

#20 cyycyj opened 10 months ago
17
Improve readability

#19 Adamtaranto opened 10 months ago
0
13 refresh codebase

#18 Adamtaranto closed 10 months ago
0
No 'rU' option in Python 3.12

#17 PengfeiInTuebingen closed 10 months ago
4
Feature: Align and Extend

#16 Adamtaranto opened 10 months ago
5
Package Distribution

#15 Adamtaranto opened 10 months ago
1
Automate testing

#14 Adamtaranto opened 10 months ago
1
Refresh codebase

#13 Adamtaranto closed 10 months ago
0
Convert rU to r

#12 Adamtaranto closed 10 months ago
1
error "invalid mode: 'rU' " in teloclip (v. bioconda)

#11 stefankusch closed 10 months ago
0
Automatically extend contigs

#10 ihbxiongjie opened 2 years ago
1
Find existing telo repeats in contigs

#9 Adamtaranto closed 10 months ago
1
NNNNN reads

#8 JWDebler closed 3 years ago
8
functionality to extract reads at NNN gaps in scaffolds?

#7 juntkym closed 4 years ago
2
Interactive Contig extension

#6 Adamtaranto closed 10 months ago
1
Summary report option

#5 Adamtaranto opened 5 years ago
0
Verify: Correct read slice coords for negative strand alignments

#4 Adamtaranto closed 5 years ago
2
Calculate alignment end position from CIGAR

#3 Adamtaranto closed 6 years ago
1
Add rev complement motif search

#2 Adamtaranto closed 6 years ago
1
Restrict motif search to clipped region

#1 Adamtaranto closed 6 years ago
1