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Hi @corneliusroemer just to highlight something went wrong with the last nextclade updates:
BL.1.3 : it is defined by S:F490L and it is around 27 sequences but the nextclade BL.1.3 query on covspec…
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From branch 2 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1768
There is a new way to form DeFLiRT via S:F32del.
KP.2+T22795G+T24637G+del21656_21658(S:F32del)
GISAID que…
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Definition of [variation selector sequences for math chancery/roundhand uppercase letters ](https://www.unicode.org/L2/L2020/20275r-math-calligraphic.pdf)have been approved for Unicode 14, to be publi…
tiroj updated
2 years ago
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When we have splice variants we need to provide all protein sequences as variants.
We need to define transcript 1 and 2 or 1,2,3, whatever is there and need to provide variants on protein tab
E…
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Hi,
Do you provide any resource for the list of mutational changes per clade?
In the dataset that is acquired with Nextclade CLI, `nextstrain/sars-cov-2/wuhan-hu-1`, there is this statement in R…
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I tested the tool on a couple of protein sequences and for one of them the predicted DNA sequence is too complex for synthesis for both IDT and twist.
Twist has the following rules to determine wheth…
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- [ ] Move the [WDL](https://dockstore.org/my-workflows/github.com/rlorigro/sv_merge/hapestry_merge_scattered) to appropriate location?
- [ ] Check compatibility with existing pipeline (what are req…
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The additional meta-data on genetic variants is very limited. A detailed encoding of genetic variants is required which we then reference when encoding genetic variants of genes. Pharmvar just lunched…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/656
### **Description**
**Sub-lineage of:** XBB.2.3.3
**Earliest sequence:** 2023-7-30, Netherlands, Noord-Brabant —…
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By VirologiaHUCA
Description
Sub-lineage of: XBB.1.5
Earliest sequence: 2022-12-09
Most recent sequence: 2023-03-31
Countries circulating: Spain (10 sequences, 7 of them in Asturias), USA (9), F…