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I want to convert 10x Genomics single cell data to AIRR format. Is it possible?
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https://hutchdatascience.org/Choosing_Genomics_Tools/single-cell-rna-seq.html has an error -- "Full length..." slide is duplicated
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Hello! I am a student currently studying single-cell genomics and have been deeply impressed by your excellent model.
I tried following the vignettes/SPOTlight_kidney.Rmd that you posted, but encou…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hi,
I found the list missed some recent papers:
>[Multimodal Integration] [2022 Nature Biotechnology] Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
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比如这个数据已经经过了如下的处理,可以用您们的包直接读入吗?
Single-cell suspensions were converted to barcoded scRNA-seq libraries by using the Chromium Single Cell 3’ Library, Gel Bead & Multiplex Kit and Chip Kit (10x Genomics…
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Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomicsProject UUID: f81efc03-9f56-4354-aabb-6ce819c3d414Wrangler/s: William,G,Sullivan…
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# Exploratory analysis of big biological data in R (a short course)
## Pre-learning
- Datacamp
## Classes
1. Tidy data. dplyr.
2. More tidy data. tidyr. ggplot2.
3. Genomics example…
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I used VarTrix to extract single cell variant information from our 10x Genomics single cell data
$vartrix --bam $out_bam --cell-barcodes $barcodes --fasta $fasta_file --vcf $out_vcf --out-variants $o…
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Hi - thanks for a nice tool! I have a quick question regarding the best approach for using cellsnp/vireo in our experimental setup:
We have generated data from 8 separate 10x Genomics single-cell rea…