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Hi,
I am using an HPC that has miniconda installed and singularity.
I have downloaded the docker image but I am new with singularity and I don't know how to convert the docker parameters into sing…
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**What happened?**
I downloaded the latest version 1.2.2.post1.dev745+gec7aabd. When I tried to press the 'delete' key to delete characters in the GUI, it didn't work and I was not able to delete cha…
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Hello,
I'm trying to run PGAP on an HPC cluster using singularity + slurm and I'm running into some troubles.
While pgap is installing/running fine with our "test genome" on the main machine t…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Is your feature request related to a problem? Please describe.
Several of the environments I would like …
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**Describe the bug**
I ran on the University HPC a python script using NEST 3.8 docker image with OpenMPI and Singularity. When I used slurm, it gave errors.
**To Reproduce**
Steps to reproduce…
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### Description of the bug
I've run into an issue running the Sarek pipeline with Sea Urchin genome data. I would like to run Manta to find all variants from short read DNA sequencing data. I have al…
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- [ ] clone repo to HPC, e.g. GRNET
- [x] test running the delft3dfm singularity container
- [ ] test running the delft3dfm docker container with udocker https://github.com/c-scale-community/workflo…
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Hi,
I noticed that poreCov crashes when running pangolin via singularity and a reasonably modern nextflow version. It seems that recent updates in the path mounting defaults of nextflow broke the de…
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Hello,
I'm having some trouble running stamp preprocess. I am just testing it on one .svs file right now.
Below is the script I wrote for sbatch submission using SLURM:
```
#!/bin/bash
#SBA…
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ATM we only target `linux/amd64` as platform. This unnecessarily reduces the utility of OCR-D. For example, Apple hardware will almost always be some ARM CPU (becoming slow under QEMU or not even supp…