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### Your name
Coralina Hernández Trujillo
### Your affiliation
CIEMAT, Madrid, Spain
### Please provide a clear and concise description of your question or discussion topic.
I have been trying to…
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Hello, I'm working with a graduate student trying to use QCxMS on our HPC. We're on version 5.2.1. I'm working from the instructions found here:
https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/…
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When using a local executor the running logs appear right away, in the console it was launched from. But when using slurm one has to fish for the log files.
This can be made easier by automatically…
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Hi,
thank you for sharing this nice tool!
I've needed to adapt it to cgroups v2 for my slurm cluster:
- there is no `cpu` or `memory` (`/sys/fs/cgroup/{cpu,memory}`) at the root of the path
- t…
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## Bug report
I am noticing a problem with the Nextflow-SLURM interface when processing large number of jobs. For example, I am running a workflow and have spawned ~10,000 tasks (50 samples * 150 …
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- [x] Find all places in the code, where job is being submitted on SLURM
- [ ] Refactor, so each job submission will be outside of the main script
- [ ] Refactor StatsPipeline function
- [ ] Re…
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I'm looking for an option similar to MinCount, but instead of specifying the minimum number of nodes that are always running, I'd like to specify that there is at least X nodes running and those nodes…
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Is there a way to configure the executor so job logs to the log locations specified in my rules? (i.e. just like when running my workflow locally outside of SLURM). So instead of everything going to `…
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### Motivation: Why do you think this is important?
[Slurm](https://slurm.schedmd.com/overview.html) is a widely used workload management system in many HPC (High-Performance Computing) compute clust…
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By following the below link we are able to setup the Slurm external DB and cluster https://docs.aws.amazon.com/parallelcluster/latest/ug/external-slurmdb-accounting.html
By leveraging slurm externa…