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## How to reproduce
-Access: http://smk.pathfinder.gov.bc.ca/smk-ui/
-Create a site
-Upload geojson file (ZIP attached below)
-Turn on "Display as Cluster" for the uploaded layer
-Click Done Ed…
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showyourwork version: 0.4.4.dev37+g1526059 (latest on main branch as of August 1)
snakemake version: 7.15.2
Python version: 3.9.19
Minimal reproducible example:
In one of my projects I changed…
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Challenge - re-build the BC Parks DMF site, SMK style using only the GUI author.
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Hi Ryan,
I was trying to reproduce some of the results per the README and I've run into some issues. I would appreciate your help.
### 1. SLiM syntax not up-to-date
I ran into some issues w…
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Hi,
when running the `rule repair_barcodes` in cell_barcodes.smk I get the following error:
> Traceback (most recent call last):
> File "PATH/.snakemake/scripts/tmp3jjaymxl.repair_barcodes.p…
PGuen updated
2 years ago
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Couple of items:
1. Please add a script in the Snekmer/resources/tutorial/learnapp_tutorial_files/ folder that will run the learn and apply examples (see Snekmer/resources/tutorial/demo…
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Running snipit pipeline.
MissingInputException in line 68 of /home/lab6/anaconda3/envs/civet/lib/python3.9/site-packages/civet/scripts/snipit_runner.smk:
Missing input files for rule gather_graphs:
…
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I am trying to run the pipeline with a custom reference (whole genome). I am unsure what parameters to specify so the pipeline successfully runs.
There is a `--analysis-mode` flag, which accepts (…
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Hello,
Wanted to share the following error obtained when running MTase-linker.
```
Traceback (most recent call last):
File "/localdata/researchdrive/gkanaan/tools/ML_dependencies/ML_envs/06b…
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Hi @Hoohm
I am using the dropSeqPipe v0.4 and have installed snakemake using conda on custom directory. When I execute the pipeline, I am getting below error with fastqc.smk. Can you please let me…