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PNNL-CompBio
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Snekmer
Pipeline to apply encoded Kmer analysis to protein sequences
BSD 3-Clause "New" or "Revised" License
12
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1
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Issues installing on Windows 11
#125
wichne
opened
3 weeks ago
7
Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml
#124
tnitka
opened
2 months ago
3
Apply fails with single input file
#123
tnitka
opened
3 months ago
2
Update Learn / Apply annotation file format
#122
jjacobson95
opened
3 months ago
0
Increasing min_rep doesn't reduce cluster memory usage
#121
tnitka
opened
4 months ago
0
Add Dockerfile generation to Continuous Integration
#120
jjacobson95
opened
5 months ago
0
Turn into Pypi Package
#119
jjacobson95
closed
2 months ago
2
Enable background subtraction / file unzipping
#118
christinehc
opened
6 months ago
1
LA tutorial issues
#117
biodataganache
opened
6 months ago
1
Functionmotifs
#116
tnitka
closed
3 weeks ago
4
Kmer association
#115
jjacobson95
closed
6 months ago
10
Update Learn Apply Output
#114
jjacobson95
opened
11 months ago
0
Update snekmer workflow graphic
#113
biodataganache
opened
11 months ago
0
Update main readme
#112
biodataganache
opened
11 months ago
0
docs: change base class for SnekmerModel
#111
christinehc
closed
11 months ago
0
Specifying input directory causes PeriodicWildcardError
#110
tnitka
opened
1 year ago
2
Kmer association
#109
jjacobson95
closed
11 months ago
5
Snekmer search: SnekmerModel' object has no attribute 'predict_proba
#108
joeho604
closed
1 year ago
7
chore: combine branches
#107
christinehc
closed
1 year ago
0
Update README.md
#106
lnanderson
closed
1 year ago
0
Model version
#105
christinehc
closed
1 year ago
0
[chore] merge main changes into branch
#104
christinehc
closed
1 year ago
0
[docs] Add Apple silicon / additional instructions
#103
christinehc
closed
1 year ago
0
M1 issues
#102
christinehc
opened
1 year ago
0
Docs
#101
christinehc
closed
1 year ago
0
Merge docs changes
#100
christinehc
closed
1 year ago
0
Update install.rst
#99
jjacobson95
closed
1 year ago
0
Enable nested directory output
#98
christinehc
closed
1 year ago
2
Disable ability to specify more than 1 configuration file
#97
christinehc
closed
1 year ago
0
Use Mamba in install instructions
#96
christinehc
closed
1 year ago
0
[docs] Add CLI options to docs via `sphinx-argparse`. Update FAQs
#95
christinehc
closed
1 year ago
1
Enable continuous integration
#94
christinehc
closed
1 year ago
1
Update documentation and demo example
#93
christinehc
closed
1 year ago
0
Jason dev
#92
biodataganache
opened
1 year ago
9
[report] Fix directory explorer link in model report
#91
christinehc
closed
1 year ago
0
Enable result summary reports
#90
christinehc
closed
1 year ago
0
Model packaging
#89
biodataganache
opened
1 year ago
1
Min_filter impact on modeling results
#88
biodataganache
opened
1 year ago
0
min_filter as percentage
#87
biodataganache
opened
1 year ago
0
Staging
#86
biodataganache
closed
1 year ago
0
Fix speed
#85
biodataganache
closed
1 year ago
0
Fixes cluster issues, and makes demo_example better
#84
biodataganache
closed
1 year ago
1
[v1.0.1] Update `rules.common_basis`. Bugfix for `rules.unzip`
#83
christinehc
closed
1 year ago
0
Inconsistencies arising from input_file_regex
#82
wichne
opened
1 year ago
0
[skip ci][bugfix] Fixed workflow-breaking bugs in cluster code
#81
christinehc
closed
1 year ago
0
Pull kmer length and recoding alphabet from model in search mode
#80
wichne
opened
1 year ago
0
Fix speed
#79
biodataganache
closed
1 year ago
0
Addressed speed issue
#78
biodataganache
closed
1 year ago
0
Speed issue
#77
biodataganache
closed
1 year ago
0
updates
#76
biodataganache
closed
1 year ago
0
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