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Hoohm
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dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
Creative Commons Attribution Share Alike 4.0 International
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multiple cell barcodes
#121
ayyildizd
opened
1 year ago
0
Fix: Temp in construction removed
#120
Hoohm
closed
1 year ago
0
Add citation file for GitHub widget
#119
TomKellyGenetics
closed
2 years ago
2
Error at perl locate
#118
amufaamo
opened
2 years ago
0
SyntaxError in line 7 of Snakefile
#117
amufaamo
closed
2 years ago
4
Error in rule repair
#116
Eigertje
opened
2 years ago
0
Unsupported pickle protocol 5 in repair_barcodes.py
#115
PGuen
opened
3 years ago
2
Also a problem with ViolinPlot
#114
ljouneau
opened
3 years ago
0
ConvertToRefFlat fails while running Drop-seq_tools-2.4.0
#113
geshtin
opened
3 years ago
5
create_star_index:
#112
jkubis96
closed
3 years ago
0
Less detected lncRNA
#111
YOU-k
closed
4 years ago
1
CreateCondaEnvironmentException: Could not create conda environment from (env).yaml
#110
dgithub208
opened
4 years ago
0
Arabidopsis annotation missing transcipt_name
#109
vuzun
opened
4 years ago
2
Issue with fastqc.smk
#108
rjg2186
opened
4 years ago
10
what strategy is applied to select CB
#107
YOU-k
opened
4 years ago
1
Running dropSeqPIpe on 10X data
#106
suminwei2772
opened
4 years ago
1
10X split by oligos
#105
klevdiamanti
closed
4 years ago
0
Query regarding ratio in config.yaml
#104
rjg2186
opened
4 years ago
0
help undestanding output
#103
RichardCorbett
opened
4 years ago
13
unable to run conda as standalone application
#102
suminwei2772
opened
4 years ago
9
First test with Dolomite Nadia data
#101
RichardCorbett
opened
4 years ago
9
10x v2 filter part in config.yaml
#100
YOU-k
opened
4 years ago
2
Problem running the new version
#99
manarai
opened
4 years ago
3
NH tag not found in BAM file
#98
abmmki
closed
4 years ago
1
Doc update
#97
seb-mueller
closed
4 years ago
3
Major overhaul of documentation towards version 0.6
#96
seb-mueller
opened
4 years ago
2
migrate to Seurat version 3
#95
TomKellyGenetics
closed
4 years ago
1
migrate to Seurat version 3
#94
TomKellyGenetics
closed
4 years ago
7
migrate to Seurat version 3
#93
TomKellyGenetics
closed
4 years ago
5
Fix numpy error calling multiQC
#92
TomKellyGenetics
closed
4 years ago
9
Resolve issue with vioplot
#91
TomKellyGenetics
closed
4 years ago
2
Problems when runing from conda env
#90
mcjmigdal
opened
4 years ago
1
Another type of violin plot failure
#89
Hofphi
opened
4 years ago
2
How are R1 reads filtered
#88
seb-mueller
closed
4 years ago
1
Locus extraction for Introns
#87
JaydeepBhat
closed
4 years ago
2
java.lang.OutOfMemoryError: GC overhead limit exceeded
#86
PGuen
closed
5 years ago
2
No rule to produce meta
#85
abmmki
closed
4 years ago
2
Genome not found, Picard's command line syntax is changing, violing plot not generated, expression.tsv not generated
#84
abmmki
closed
4 years ago
8
violin plot fail
#83
terooatt
opened
5 years ago
7
limitGenomeGenerateRAM=31000000000
#82
abmmki
closed
5 years ago
3
KeyError for 'barcode-whitelist'
#81
abmmki
closed
4 years ago
2
.snakemake/scripts folder is empty
#80
MarleyCodes
opened
5 years ago
3
Shouldn't we correct cell-barcode errors before identifying core barcodes?
#79
dylkot
opened
5 years ago
4
Problem creating refFlat
#78
Hofphi
closed
4 years ago
6
Rerun with changed expected_cells in samples.csv requires remapping
#77
seb-mueller
closed
4 years ago
4
Error in plot_yield, probably due to pigz bug in bbmap logs
#76
seb-mueller
closed
5 years ago
4
fastqc not looking for adapters in the adapter file
#75
dylkot
closed
5 years ago
6
sircel integration?
#74
colindaven
closed
4 years ago
2
Insufficient memory for the Java Runtime Environment error
#73
seb-mueller
closed
5 years ago
6
Hotfix/0.41
#72
seb-mueller
closed
5 years ago
7
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