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Figure out how to report progress messages from spatial analysis seen in R in the app. "spatial analysis complete" and messages about errors that stop the analysis already appear in app. This would gi…
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I have added a basic section to spatial analysis using the "tmap" package (with "tmaptools" too).
I chose this because it allows both sf and sp files and has similar syntax to ggplot2 but simpler f…
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As a novice user of PASTE2, I'm truly grateful for the provision of such a robust 3D spatial transcriptome reconstruction tool. Having successfully replicated results using the demo data, I'm now conf…
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This issue outlines 5 tests to be used as a minimum test set that can be manually run in the ccviR app prior to release. These 5 tests have been designed to check that a range of app functions work pr…
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Hi all! In a couple of weeks, I'd like to follow up Jamie's recent **R spatial workshop** with round 2, in which we will focus on manipulating vector spatial objects, especially polygons and shapefil…
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User comment:
lookup table, at first, I was thinking it runs an spatial analysis to calculate the area of the different resources inside the buffer centered in in the pin. But that´s not the case,…
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Point shapefile can be input into Spatial Data Analysis (tested on Range polygon shapefile) without warning user that the wrong data type has been input. Spatial data analysis is run with the followin…
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Initial data is coming up in which perturbation screens have been analysed using spatial technologies. This workstream should deal with tools to analyse and compare these data.
@Zethson
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Dear @sqjin
Thank you for providing this valuable resource.
I have two questions,
Q1.
I want to understand the impact of stroma spots on neighboring cells.
In such cases, is it reasonable t…
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Hi,
First, thanks for developing the Imaging Transcriptomics toolbox—it's been incredibly helpful for my research.
I have a quick question about the models of partial least-squares (PLS) regress…