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Hi `SpatialExperiment` authors,
A few minutes ago I gave you a heads up on Slack related to a potential new `spaceranger` release (the last publicly available one is 2.0.0). See https://community-b…
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Same as https://github.com/LieberInstitute/spatialDLPFC/issues/84.
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Hi Nick,
Can you help me run `cell2location` on this dataset using as input reference the Mathys et al snRNA-seq data?
Thanks!
Details:
* Mathys et al paper: https://doi.org/10.1038/s415…
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if (!exists("spe"))
spe
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Let's work on this @shkwon17 too ^^.
I'll need to update https://github.com/LieberInstitute/spatialLIBD/blob/7b2a9891428967744ab4adf152188d4b591903da/vignettes/spatialLIBD.Rmd#L594 once this Twitte…
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Similar to https://github.com/LieberInstitute/spatialDLPFC/issues/75. You could ask Abby for a DSgs if you need some help Sang Ho.
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Same as https://github.com/LieberInstitute/spatialDLPFC/issues/85.
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Hello,
We recently used Samui to share a [10-sample dataset](https://samuibrowser.com/from?url=visium-spg-ad.s3.amazonaws.com/&s=V10A27106_D1_Br3880_AD&s=V10A27004_A1_Br3874_control&s=V10A27004_D1_…
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Kristen told us that Abby @abspangler13 has some new code for this at `spatialDLPFC`. Abby, can you point us to it? Thanks!
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Hi,
From the README.md, there's a link to https://loopybrowser.com/from?url=libd-spatial-dlpfc-loopy.s3.amazonaws.com/VisiumIF/&s=sample. I would have expected that link to contain the Visium SPG (…