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Suggestions:
- [x] C. elegans
- [ ] E. coli
- [x] S. cerevisiae
- [ ] Plant species: http://zzdlab.com/plappisite/index.php
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On NodeNorm, [ENSEMBL:ENSP00000263368](https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=ENSEMBL%3AENSP00000263368&conflate=true) exists as a single-identifier clique. However, ve…
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cobra() function is not included with NetZooR_1.6.0 package installed from Bioconductor in R 4.3.1 on WINDOWS:
```
batch length(unique(batch))
[1] 17
> number_of_samples X dim(X)
[1] 572 …
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Here is the updated list they provided Dec 15 2023.
We are generally interested to find gene pairs where:
- there is a strong Cell Painting ORF pos or neg correlation (column E: ORF_similarity_ab…
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https://mp.weixin.qq.com/s/jW4HC_pemLFVZrqSXUWP_A
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Dear Guang:
I am trying to compareCluster for two list of enriched locustag for my bacteria Pseudomonas aeruginosa PAO1. so it does not have a org.db. I can do enrichKEGG using just the locustag and …
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**Attach your log file**
I am unable to get a log file for this call.
**Describe the bug**
THis used to work before but now it says could not find function .validInput, Am I missing a package…
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I tried to follow the tutorial from "https://bioconductor.org/packages/release/bioc/vignettes/BioTIP/inst/doc/BioTIP.html", but with an error message with "getNetwork" function, and the information …
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Dear colleagues,
it would be nice if you could update the STRINGdb default version from 11.5 to 12.0.
Thanks a lot,
Anna
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Hi,
I was eager to run this and see what it produces. I do lots of quantitative phosphoproteomics and have always been dissatisfied with the s/w for analysis. I was hopeful that this might do a bun…