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Hello,
I want to run Qmatey to classify NGS metagenomic data through the custom database. I have tried many times but failed to run successfully.
I have some files in project directory.
>1. C…
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**Name the workflow**
Taxonomic-Profiling-Minimap-Megan
**Describe the question and context**
I am using Megan GUI to view read classification from the rma files ("6-rma" output folder). The LCA …
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### Description of feature
```
ch_input_for_kaiju = ch_input_for_profiling.kaiju
.multiMap {
it ->
…
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Submitting Author: Moritz E. Beber (@Midnighter)
All current maintainers: (@Midnighter, @sofstam, @jfy133)
Package Name: taxpasta
One-Line Description of Package: TAXonomic Profile Aggregation and …
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We need an action supporting dereplication of MAGs into unique genomes.
**Acceptance criteria:**
- uses dRep ([link](https://drep.readthedocs.io/en/latest/index.html))
- uses `SampleData[MAGs]`…
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Ultimately we'll want `FeatureTable` and `FeatureData[Taxonomy]` results to use these data in downstream applications. One option would be to use [Bracken](https://ccb.jhu.edu/software/bracken/) to go…
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https://mp.weixin.qq.com/s/xqO7Wur2cMLLwRUSgR1yuQ
ixxmu updated
11 months ago
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Set a Taxon Level (e.g. Order, Class, etc...) and display # of digitized specimens in each larger grouping. E.g. for Insect Collection, I want to see # of specimens by various taxonomic groupings. Kee…
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In addressing #512, i noted how slow some of the tests were very slow
An initial commit identified the function `format_sites` as being very slow.
Suggest running some profiling to identify the…
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if protein family is driven by taxon, it is easily over 100 genomes and 10,000 families, which never loads. I wish I can
1. change cluster program to multi-cpu version
2. move it to app service like B…