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PacificBiosciences
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pb-metagenomics-tools
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
BSD 3-Clause Clear License
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MissingInputException in rule CheckM2ContigAnalysis
#87
ThenaHu
opened
4 weeks ago
1
Error in localrule MAGContigNames
#86
pailloufat-stack
closed
1 month ago
2
Error: Unable to allocate 30.9 TiB for an array with shape
#85
CaroleBelliardo
opened
1 month ago
1
Error in rule MAGContigNames
#84
bak1121
closed
1 month ago
0
error is in rule Checkm2ContigAnalysis
#83
bak1121
closed
1 month ago
2
Could not create conda environment from metabat
#82
bak1121
closed
2 months ago
2
Clarification on the "JGI.filtered.depth.txt Output File"
#81
CaroleBelliardo
closed
3 months ago
2
Filter superbins
#80
dportik
closed
3 months ago
0
Mag mapping
#79
dportik
closed
4 months ago
0
Pb mag mirror
#78
dportik
closed
5 months ago
0
SQLite_TOOBIG error SAM2RMA
#77
MicroSeq
closed
3 months ago
4
No Execution of HiFi-MAG-Pipeline
#76
Schadone
closed
3 months ago
2
Add internal sequences to taxonomy?
#75
cjprybol
closed
6 months ago
4
“Taxonomic-Profiling-Diamond-Megan”Does this tutorial adapt to illumina Generation II contigs after assembly
#74
YQ-WW
closed
6 months ago
1
duplicated key for fasta
#73
ArthurPERE
closed
6 months ago
1
CreateCondaEnvironmentException (HiFi-MAG-Pipeline)
#72
BioinfoN
closed
9 months ago
2
NCBI-nt minimap2 Index too large
#71
eparisis
closed
9 months ago
1
HiFi-MAG-Pipeline: Upgrade minimap2 to 2.26
#70
audy
closed
9 months ago
1
SemiBin2 fails to generate coverage files - Snakemake rule failure
#69
MicroSeq
closed
10 months ago
2
Error in rule Checkm2Database
#68
Rafa-Seong
closed
4 months ago
7
Minimap2 issue with map-hifi
#67
ivwonter
closed
4 months ago
2
diamond-megan update
#66
dportik
closed
1 year ago
0
Taxonomic-Profiling-Diamond-Megan - Snakemake package conflicts cannot be resolved
#65
psampara
closed
1 year ago
2
LCA assignment in rma file
#64
rocherbpb
closed
1 year ago
2
KeyError in line 58 of Snakefile-hifimags.smk: 'completeness_aware'
#63
cho7-31
closed
1 year ago
5
bug fix for large refs
#62
dportik
closed
1 year ago
2
KeyError in 'gtdbtk_data'
#61
naga-onu
closed
1 year ago
0
KeyError during AssessCheckm2Bins
#60
Htrivett
closed
1 year ago
3
UpdateNCBI.prot error
#59
minjaeyu719
closed
1 year ago
4
[Error] ChechM2 Diamond database incompatible with Diamond version
#58
franlat
closed
1 year ago
1
MissingInputException in rule LongContigsToBins
#57
gvic628
closed
1 year ago
5
Error in rule DastoolAnalysis
#56
melodymale
closed
1 year ago
6
Fix DAS_Tool bug
#55
dportik
closed
1 year ago
0
Fix envs
#54
dportik
closed
1 year ago
0
Error in DASinputSemiBin2 and DASinputMetabat2
#53
melodymale
closed
1 year ago
6
How to change tmpdir from /scratch to a specific directory I've made
#52
eag-microbio
closed
1 year ago
5
CreateCondaEnvironmentException
#51
BardeenD
closed
1 year ago
1
Contig file as input?
#50
PeymanDerik
closed
1 year ago
1
Could not create conda environment from checkm2
#49
melodymale
closed
1 year ago
4
Fix path bug:
#48
EisenRa
closed
1 year ago
0
what's the difference between filtered and unfiltered in taxonomic-profiling-minimap-megan
#47
ye00ye
closed
1 year ago
1
Error in rule GTDBTkAnalysis：PplacerException
#46
YenlingPeng
closed
1 year ago
2
Error in rule CopyDAStoolBins:
#45
jmartinsjrbr
closed
1 year ago
1
manipulating final graphs of HiFi Mag pipeline
#44
Htrivett
closed
1 year ago
1
Mags v2
#43
dportik
closed
1 year ago
0
Module megan not found
#42
PeymanDerik
closed
1 year ago
2
Error in rule ConcoctAnalysis
#41
Htrivett
closed
1 year ago
10
Error in rule MakeRMAunfiltered
#40
PeymanDerik
closed
1 year ago
1
Error in rule RunDiamond
#39
PeymanDerik
closed
1 year ago
1
fasta or fastq?
#38
PeymanDerik
closed
1 year ago
1
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