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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
reece updated
2 years ago
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Hi,
I'm looking at the and product of CAT, run only using TransMap and excluding the indel classification `r.extend(find_indels(tx, psl, aln_mode))`.
I'm now trying to build a table of orthologs…
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hello,
I am run Star-fusion by singularity by the code below:
```shell
apptainer exec -e -B `pwd` -B /u/project/rslo/jianfan/GRCh38_gencode_v37_CTAT_lib_Mar012021.plug-n-play/ctat_genome_lib_build_…
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This is an open issue where you can comment and add resources that might come in handy for NaNoGenMo.
There are already a ton of resources on the old resources threads of previous editions:
* [2022]…
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I have a few questions that I hope will not much of your time.
- Is there support for IPA or some other phonetic pronunciation for words that are incorrectly pronounced or that you have a specific …
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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
8 months ago
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1. Build Workflows
- RNA-seq quantification
- RNA-seq variant calling
- ChIP-seq
2. Associated Datasets/Training Data
3. Interactive Tours based on content
4. Share with GTN/GOBLET
5. Galaxy …
cschu updated
8 years ago
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### DO NOT REMOVE OR SKIP THE ISSUE TEMPLATE
- [X] I understand that I will be **blocked** if I *intentionally* remove or skip any mandatory\* field
### Checklist
- [X] I'm reporting that yt-dlp is…
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Post questions about the following orienting reading:
Timmermans, Stefan and Iddo Tavory. 2012. “[Theory Construction in Qualitative Research: From Grounded Theory to Abductive Analysis](https://jo…