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Hi there,
Hope you're well! I am running accucopy on multiple paired tumour-normal WGS samples. It has worked perfectly on most of them, except for in one sample where the infer_out.txt file is empt…
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(providence-project) PS D:\OpenHealth> python app.py
D:\OpenHealth\app.py:18: SyntaxWarning: invalid escape sequence '\B'
brain_model = load_model('Artifacts\Brain_Tumour\BrainModel.h5')
D:\OpenH…
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Hi,
Thanks for developing such a promising package !
I just started using it and I'm having an issue with the betaHMM function. When using methylation data other that those provided with the pac…
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Dear ascat community,
I hope my message reaches you well ! First and foremost, congrats for the great and very interesting pipeline and supported analyses for cancer research ! Currently, I'm reach…
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Hi, I noticed that some IDs from MOA assertions accessed in 2022 have changed. For example, PAK1 amplification association with reduced benefit from tamoxifen is currently listed under assertion_id 75…
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The user guide describes how purity estimation is done for DNA sequencing. But, could a couple of sentences be added that comment on how feasible it is to do with RNA sequencing? It would be interesti…
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Hi, I have updated my Spectre to 1.2.0, and also updated R and R studio to the latest build.
When I run the new advanced spatial workflow, everything works great and the addition of the regions and…
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## Describe the bug
If program or entity level exceptions are deleted, and then migrate to new dictionary, it does not trigger system to check program or entity level exceptions.
## Steps To Repro…
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Sorting by decreasing chromosome size
Correcting Tumour
Error in `[[ $ $ [[ [[
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# Actual
The statement: "Patients matching at least one keyword will be returned. e.g. `depression diabetes` will return `depression wheelchair` and `diabetes tumour` ."
This statement is unclear in…