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ImmuneDynamics
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Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
https://immunedynamics.github.io/spectre/
MIT License
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Updating v1.1.0 to v1.2.0
#194
tomashhurst
closed
1 month ago
0
Adapting conversion of data.table to sce for input data.frame
#193
denvercal1234GitHub
opened
1 month ago
0
Add CI
#192
ghar1821
closed
2 months ago
2
Update Spectre rPCA.R
#191
tomashhurst
closed
3 months ago
0
Updates
#190
tomashhurst
closed
3 months ago
0
Discovery workflow with batch alignment using CytoNorm -- link broken
#189
mariecrane
closed
3 months ago
4
Advice for automated cell classification workflow between datasets with different number of parameters
#188
denvercal1234GitHub
opened
4 months ago
6
Unable to download and install development version
#186
earbebarnes
opened
5 months ago
10
Clustering datasets with >50 million cells
#185
AbbeyFigliomeni
closed
3 months ago
10
Experiment with different CI for master
#184
ghar1821
closed
1 month ago
1
Simplify dependencies
#183
ghar1821
closed
6 months ago
0
How to identify/visualize co-expression (correlation) between markers?
#182
WilliamMWei
opened
8 months ago
5
cannot install on an ARM mac
#181
chintanparekh2301
closed
8 months ago
4
Problem with make.multi.plot.R
#180
markmelzer
closed
8 months ago
7
Error in prep.cytonorm
#179
mortadelo93
closed
8 months ago
4
Rgeos rgdal fix
#178
tomashhurst
closed
9 months ago
0
The data Error: object 'merge.channels' not found in Ilastik Protocol.
#175
andreyevteev23
closed
8 months ago
2
Bug with nCells in prepareFlowSOM wrapper within Spectre general discovery workflow
#171
dgrfs
closed
1 year ago
0
Error with prep.cytonorm
#169
MattCrossley99
closed
1 year ago
3
Updates
#168
tomashhurst
closed
1 year ago
0
Quantile error in make.colour.plot()
#167
jamesboot
closed
1 year ago
4
Error when running run.flowsom with meta.k set to 2
#166
jamesboot
closed
1 year ago
2
Advice on how to sub-cluster?
#164
denvercal1234GitHub
opened
1 year ago
8
Exported channel values do not agree with what was shown in FlowJo Biex?
#163
denvercal1234GitHub
closed
3 months ago
8
Use here package to replace setwd in all functions
#162
ghar1821
opened
1 year ago
1
Real or technical artifacts due to errors detected in UMAP following run.flowsom()?
#161
denvercal1234GitHub
closed
3 months ago
3
Revert "Fixed typo and clarified that add.dat can be data.frame too"
#160
ghar1821
closed
1 year ago
0
geom_point to geom_pointdensity in fast.colour.plot
#158
sirclockalot
closed
1 year ago
1
Warning: Stopped early on line 498. Expected 2 fields but found 3. Consider fill=TRUE and comment.char=. First discarded non-empty line: <<$P9E,0,0>>
#157
denvercal1234GitHub
closed
1 year ago
1
Error installing dependency exactextractr
#156
jamesboot
closed
1 year ago
6
Error in is(d, "matrix") : object 'dat.bk' not found during Spectre::run.umap
#155
denvercal1234GitHub
closed
1 year ago
1
No appropriate meta clustring with run.flowsom
#154
Tenrolf
opened
1 year ago
3
Error in prep.cytonorm - Reading FCS files
#153
grizzly2207
closed
3 months ago
5
Create a function argument to dictate the order in multi plots
#151
tomashhurst
opened
1 year ago
0
Is skipping data transformation for channel values in Spectre workflow only is specific to the Spectre workflow?
#150
denvercal1234GitHub
closed
3 months ago
2
How to best use peacoQC() in Spectre workflow?
#149
denvercal1234GitHub
closed
1 year ago
8
How to identify and remove "bad/outlier" FCS files objectively, before performing clustering?
#148
denvercal1234GitHub
closed
1 year ago
4
How to use a different cofactor for every channel in Spectre workflow?
#147
denvercal1234GitHub
closed
1 year ago
2
Install problem for R version 4.2.1
#142
charlottedevries
closed
1 year ago
4
Improve umap runtime
#141
ghar1821
closed
1 year ago
5
transpose = T/F in make.pheatmap() produced inconsistent results
#140
denvercal1234GitHub
opened
1 year ago
3
Generating Summary Table
#139
jvazquez3
closed
1 year ago
2
Issue when running FlowSOM in Simple Discovery Workflow
#138
SamN01
closed
1 year ago
2
Unable to install Spectre for RStudio Version 3.6.3
#135
jamila-griffith
closed
1 year ago
1
Maximum Number of Batches?
#134
ramziabb
closed
2 years ago
3
Create CODE_OF_CONDUCT.md
#130
tomashhurst
closed
2 years ago
0
Fixed typo and clarified that add.dat can be data.frame too
#129
molecules
closed
1 year ago
0
error in prep.cytonorm
#127
domivf
closed
2 years ago
4
Error in multicut_2_segment
#126
adriadalmau
opened
2 years ago
0
‘simple’ discovery analysis workflow
#125
sailseem
closed
2 years ago
7
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