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#### Simpler, containerized implementation of CaVEMan caller:
https://github.com/cancerit/cgpCaVEManWrapper
```
singularity pull docker://quay.io/wtsicgp/pcap-core:5.4.2
```
#### More modular C-b…
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### Description of the bug
I've run into an issue running the Sarek pipeline with Sea Urchin genome data. I would like to run Manta to find all variants from short read DNA sequencing data. I have al…
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Alsalam alikm..
I hope this finds you in the best of states..
h1. General plan:
Each other week we would be posting papers, tools, or methods relating to the chosen theme, and discuss that paper in …
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Dear Developers,
I recently used UCSC hg38 as a reference for gatk mutect2 variant calling. I plan to annotate the variants using VEP but from this[ thread](https://github.com/Ensembl/ensembl-vep/iss…
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**Is your feature request related to a problem? Please describe.**
No problem here, just a question and an offer.
**Describe the solution you'd like**
I am currently developing a framework for co…
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Hello,
I ran cellsnp-lite with the following command for calling variants in mitochondrial transcripts in 10X scRNAseq data and for each of three independent samples, received 16,299 variants, which …
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# Bug report
### Bug description:
We have Enum of **`62`** HTTP status codes. They stores in `http.HTTPStatus` class and **`14`** of them don't have description field.
I think it is not-obvious…
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Alsalam alikm..
I hope this finds you in the best of states..
So, back again! This time, we continue the theme of variant calling: pipelines and challenges. For this session, the 2 suggested papers …
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Hello,
I am trying to run SomaticSeq on RNA data (single-end reads) but it's really slow. It never finished because I had to kill it after 7 days. I have many large samples (~10 GB) and if the smal…
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👌 🆒 - Done
❕ - In Progress
❗ - To Do
- [x] Server
- [x] Client
- [x] Connect with @christophstach s VC code
- [ ] Make server run on daemon thread
- [x] Custom exceptions for incorrect qu…