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Offloading compiled pipelines back and forth (or at least their weights) is a useful feat when dealing with multiple models on a single device with limited VRAM (but a lot of RAM). This doesn't seem p…
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When I see "Other" sticking around in South Africa, I'm curious what those are. I'm also curious to see if any minor variants are managing to hang around at low frequencies for a long time.
The gra…
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You make a systematic error when calculating rolling averages in the variant graph at the beginning of the time-window.
You always overestimate the variant share at the beginning.
Why? The windo…
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- circular graph is not a problem, MongoDB deals with this and does not enter an infinite loop
- how specify "entry point" of the graph?
- how "backtravers"? *
* Here we really only need 2 links…
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IGraphM has functionality for recognizing cactus graphs (`IGCactusQ`). These are precisely the graphs whose 2-connected components are cycles. On the other hand, there is no functionality for recogniz…
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Background:
Basic modules must be DAGs; see:
https://oboacademy.github.io/obook/explanation/owl-format-variants/
_Basic: A variant of Simple, in that it is reduced to only a specific set of r…
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Just an issue to collect any relevant papers. For example, there's a whole Genome Biology issue on graph genomes at
https://www.biomedcentral.com/collections/graphgenomes (also see "Pangenome Graph…
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I'm terrible at closing tabs/windows/terminals (pretty much anything!). In GitSavvy I tend to use the inline diff to view and stage changes... but then I have a habit of forgetting to close them. Then…
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Dear Isaac,
I would like to apply mccortex on a large scale resequencing project. (~400 individuals, 1GB genome size),
I read through the wiki, and here is what I think a possible workflow might l…
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https://github.com/pytorch-labs/segment-anything-fast/ uses [custom Triton code](https://github.com/pytorch-labs/segment-anything-fast/blob/main/segment_anything_fast/flash_4.py) to implement a varian…