mcveanlab mccortex issues

mcveanlab / mccortex

De novo genome assembly and multisample variant calling

https://github.com/mcveanlab/mccortex/wiki

MIT License

112 stars 25 forks source link

issues

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clang: error: linker command failed with exit code 1 (use -v to see invocation)

#96 abrozzi opened 1 year ago
0
Make *** Error 255

#95 ycode-sh opened 1 year ago
0
Script availability in conda recipe

#94 mbhall88 closed 2 years ago
6
How to build a graph from input file?

#93 jermp closed 3 years ago
1
Best practice for large datasets?

#92 JohnsonStev opened 3 years ago
4
mccortex unitigs: "Fatal Error: Couldn't read 'Coverages': expected 4; recieved: 0"

#91 karel-brinda opened 3 years ago
0
mccortex unitigs: "Fatal Error: Not enough kmers in hash" or "Fatal Error: Hash table is full"

#90 karel-brinda opened 3 years ago
2
Hash table is full

#89 chatcrawler opened 4 years ago
0
ld cannot find libcurses.so

#88 markcharder closed 4 years ago
4
mccortex subgraph behaviour

#87 izaak-coleman opened 4 years ago
0
Problem running make

#86 Tj-Idowu opened 4 years ago
2
Sorted flag in .ctx header

#85 izaak-coleman closed 4 years ago
2
mccortex31 check: report error if records incomplete.

#84 izaak-coleman closed 4 years ago
4
Is there a way to rename colors?

#83 winni2k opened 5 years ago
0
Is it possible to extract kmers in bubbles?

#82 zeeev opened 5 years ago
5
Raw & clean length or coverage in one file

#81 JFsanchezherrero opened 5 years ago
2
Bug in `mccortex join` with --sort option

#80 winni2k opened 5 years ago
0
Assert error during graph cleaning

#79 lucaptra opened 5 years ago
0
Build log - identifying how many kmers were added from different files

#78 alexa-hks opened 5 years ago
0
Add R to dependencies

#77 noporpoise closed 5 years ago
0
Compilations fails: "city.c:405:10: fatal error: 'citycrc.h' file not found"

#76 jonchang opened 5 years ago
3
Problem during installation

#75 mbhall88 closed 5 years ago
2
Link creation fails on minimal example?

#74 winni2k closed 5 years ago
4
Release `1.0` tar compiles as version `v0.0.3-610-g400c0e3`

#73 winni2k closed 5 years ago
1
Release as conda package

#72 winni2k closed 5 years ago
4
Release tar does not compile

#71 winni2k closed 5 years ago
2
Build without sudo apt install

#70 ShawnCone closed 5 years ago
2
Finding sequences not in the reference genome

#69 inti opened 6 years ago
0
Mysterious parameters for plot-covg-hist.R script

#68 mbhall88 closed 6 years ago
1
out of memory

#67 jdmontenegro closed 6 years ago
6
Tackle too much variation in a region

#66 dimitrisarnellos opened 6 years ago
0
Creating cortex graph from more than two FASTQ files

#65 winni2k closed 6 years ago
3
Links files are really big

#64 winni2k closed 6 years ago
2
No reference option for bubbles/calls2vcf

#63 carlyprior closed 6 years ago
3
Pjoin memory allocation error

#62 carlyprior closed 6 years ago
3
Cygwin make fails due to missing _O_BINARY error in xxHash

#61 ffranr closed 6 years ago
1
long reads

#60 jdmontenegro closed 6 years ago
1
No output in vcfs directory.

#59 IdaBonde closed 6 years ago
1
interpretation of graph build log

#58 roddypr closed 6 years ago
5
zero coverage genotyping

#57 hcdenbakker closed 7 years ago
2
make-pipeline.pl error

#56 yeban closed 7 years ago
1
Output interpretation

#55 abeu9727 opened 7 years ago
3
Fix README

#54 iqbal-lab closed 6 years ago
0
Error message during installation

#53 abeu9727 closed 7 years ago
2
What does mccortex build do if it encounters Ns in the read?

#52 yeban closed 7 years ago
2
reads command produces an additional bogus file.

#51 yeban closed 7 years ago
1
Help output shows version 0.0.3.

#50 yeban closed 7 years ago
1
Behaviour of popbubbles command.

#49 yeban closed 7 years ago
1
mccortex clean's help output

#48 yeban closed 7 years ago
1
Cleaning failing with Assert Failed db_graph_alloc(): num_of_cols > 0

#47 Phelimb closed 7 years ago
5