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mcveanlab
/
mccortex
De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
113
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25
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Use of -G option of contigs command.
#46
yeban
closed
7 years ago
1
vcfcov and --nkmers
#45
peterdfields
closed
7 years ago
1
Add FAQ
#44
yannickwurm
closed
6 years ago
3
2-color cortex?
#43
yannickwurm
opened
7 years ago
3
reads: Add missing longopt for 'threads'
#42
fbergroth
closed
7 years ago
3
Breakpoint ref filter
#41
noporpoise
closed
7 years ago
1
Fatal Error: Hash table is full
#40
peterdfields
closed
7 years ago
3
Typo in wiki Graph-Construction
#39
tseemann
closed
8 years ago
1
No "-s" option cf. "If neither -t or -s specified, just saves output statistics"
#38
tseemann
closed
8 years ago
1
Assert Failed assem2str(): strlen(assem_stop_str[assem]) < size
#37
tseemann
closed
8 years ago
1
Typo in 'inferedges' --help
#36
tseemann
closed
8 years ago
0
Add links to papers in CITING section
#35
tseemann
closed
8 years ago
1
Missing colon in --seq2 example in Wiki
#34
tseemann
closed
8 years ago
1
Overlapping paired-end reads
#33
tseemann
closed
8 years ago
3
Make a new pre-release
#32
tseemann
closed
8 years ago
1
bcftools doesn't compile with gcc 4.9 on MacOSX
#31
rec3141
closed
7 years ago
3
fixed order of arguments
#30
rec3141
closed
8 years ago
1
server occasionally returns edges that aren't valid ints
#29
Phelimb
closed
8 years ago
1
server occasionally returns invalid JSON
#28
Phelimb
closed
8 years ago
2
Output contigs in GFA format?
#27
iqbal-lab
opened
8 years ago
2
missing tab means Bandage can't read mccortex GFA
#26
iqbal-lab
closed
8 years ago
4
Generate plots and a report from pipeline
#25
noporpoise
closed
8 years ago
0
New command: query
#24
noporpoise
opened
8 years ago
0
Graph format should use JSON header
#23
noporpoise
opened
8 years ago
0
Buffered graph loading
#22
noporpoise
closed
8 years ago
0
pipeline should have option to leave out inferedges
#21
noporpoise
closed
8 years ago
0
GFA output should include links as paths
#20
noporpoise
opened
8 years ago
0
VCF annotation/filtering
#19
noporpoise
closed
8 years ago
0
Pipeline test occasionally fails
#18
noporpoise
closed
8 years ago
1
mmap failing for large populations
#17
noporpoise
closed
8 years ago
0
Write a server
#16
noporpoise
closed
8 years ago
4
Genotype a VCF
#15
noporpoise
closed
8 years ago
1
Loading interleaved files assumes first read is first
#14
noporpoise
closed
9 years ago
0
Breakpoint caller should use novel kmers
#13
noporpoise
opened
9 years ago
0
Generate links info for reference sequence
#12
noporpoise
opened
9 years ago
0
Reduce peak memory used by `thread`
#11
noporpoise
opened
9 years ago
0
Bubble caller: don't report serial bubbles
#10
noporpoise
closed
8 years ago
1
Add common arg to configure walking: -a,--assembly
#9
noporpoise
opened
9 years ago
0
Link files should use bgzf block compression
#8
noporpoise
opened
9 years ago
0
Fatal error in pipeline
#7
MathGon
closed
9 years ago
2
Add a Gitter chat badge to README.md
#6
gitter-badger
closed
9 years ago
0
Variant calling with paired-end reads fails
#5
rene-rex
closed
9 years ago
3
Bug: input file names containing colons not accepted
#4
jeromekelleher
closed
10 years ago
1
Feature request: add verbosity control
#3
jeromekelleher
closed
10 years ago
2
Contig failing on ctx63 when path colors above 0 used
#2
er432
closed
10 years ago
1
ctx63 clean can't read "magic word"
#1
er432
closed
10 years ago
1
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