-
How to prepare data for WGBS data , Thank you!
-
Compiling stdin2beta...
SUCCESS
Compiling mask_pat...
SUCCESS
Compiling pat_sampler...
SUCCESS
Compiling patter...
SUCCESS
Compiling bp_patter...
SUCCESS
Compiling snp_patter...
SUCCESS
Co…
MinS1 updated
4 months ago
-
Hello,
I have generated WGBS/ATAC data for my samples but no WGS data. Is WGBS/ATAC data valid input for AA?
Both data are often used to infer CNV so I guess WGBS/ATAC might produce a concordant …
-
hi sir;
kraken2 is a perfect tools for identify species in metagenomic data.
there are many WGBS reads from human WGBS project ,which want to identity Possible pathogen;
can krak…
-
I got below error
raceback (most recent call last):
File "/apps_940/wgbs/cgmaptools-0.1.2/cgmaptools", line 115, in
subprocess.call([DIR + "/bin/CGmapFromBAM"]+ sys.argv[3:])
File "/app…
-
this page does not load:
https://xenabrowser.net/datapages/?dataset=WGBS%2Ftcga.WGBS.xena&host=https%3A%2F%2Fatacseq.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
-
Hi!
I am trying to BSMAP using following command line:
"bsmap-2.90/bsmap -a /media/waqas/30004AFD3CB35412/All_Data/WGBS-Seq/epiRIL-368/Raw/epiRIL-368_QC_Reads_WGBS/Epiril368_4_C_R1_L001_R1_val_1.f…
CS791 updated
4 years ago
-
Hi, thanks for developing this useful tool!
However, I had some problems when I wanted to convert my WGBS data to 850K array data, I trying to use beta_to_450k to do that, but there were some erro…
-
-
Hi Felix,
I have a couple of questions regarding Bismark. I'm sorry if they are stupid questions; I am fairly new to WGBS data and Bismark analysis (or to bioinformatics in general).
We are rese…