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nloyfer
/
wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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BAM2PAT nanopore
#88
Sepideh89
closed
1 week ago
6
Different coverages for different --np_tresholds for ONT data.
#87
ljcousse
opened
1 month ago
0
Fix for issue reading beta_to_450k reference
#86
Inforeon
closed
3 weeks ago
2
visualisation output
#85
magdaliput
closed
1 week ago
3
(+) meaning?
#84
sehee59
closed
1 month ago
4
define the cell type-specific markers, as defined in the Nature paper
#83
gyuhee0928
opened
3 months ago
0
how to solve /wgbs_tools/references/hg19/CpG.bed.gz
#82
Taaannnuuujjjjaa
closed
1 week ago
1
bed2beta error？
#81
bresf
closed
1 week ago
1
Bioconda integration
#80
Manojbioinfo
opened
4 months ago
0
Galaxy wrapper
#79
joachimwolff
opened
4 months ago
0
bam2pat-combine OT and OB?
#76
chang-bwl
closed
1 month ago
1
modbam reads and hardclipping
#75
jts
opened
5 months ago
0
Expanding the tutorial
#74
nloyfer
closed
5 months ago
1
read cram with ref
#73
GatKrieger
closed
6 months ago
1
beta_to_table: np.float deprecated in NumPy>=1.20
#72
ssj1739
closed
6 months ago
2
All ttest values generated from `wgbstools find_markers` are NAs
#71
Liying1996
closed
6 months ago
1
wgbstools for single base DNA methylation
#70
hengbingao
closed
6 months ago
1
Nanopore wgbstools vis
#69
AzlanNI
opened
7 months ago
1
Intersect (wgbstools view -L Atlas.U25.l4.hg19.bed Left_Ventricle_STL001.IGF2.pat.gz)
#68
AzlanNI
closed
7 months ago
1
beta2bed warning - incomatible (sic) with current genome reference
#67
cb4github
opened
7 months ago
0
init_genome error?
#66
MinS1
closed
1 month ago
2
Failed compiling cview
#65
MinS1
opened
8 months ago
6
segment sites mismatch
#64
chang-bwl
closed
1 month ago
1
Question regarding generating bigger blocks in brain .beta files wgbstools segment
#61
DieStok
opened
10 months ago
1
Workflow question
#60
gevro
closed
1 month ago
2
wgbstools convert is not working as expected
#59
ekushele
closed
8 months ago
2
issue when use `beta_to_450k`
#56
axxxxx08
closed
1 month ago
3
issue running wgbstools mix_pat
#55
tomh1lll
opened
1 year ago
0
bam2pat FileNotFoundError
#54
qyJING123
opened
1 year ago
1
While running bam2pat on ML and MM tag containing bam file ,reads information is printed on the terminal.
#53
vinodsinghjnu
closed
11 months ago
1
bam2pat for nanopore data has some problem in recognising CIGARX string
#52
vinodsinghjnu
opened
1 year ago
2
Find markers error
#51
gibberwocky
closed
1 year ago
2
bam2pat invalid input argument empty bam file
#50
sc2936
closed
1 year ago
1
beta2blocks
#49
gibberwocky
closed
1 year ago
1
bam2pat support for nanopore data
#48
Rodcarlessi
opened
1 year ago
9
OSError: [Errno 22] while bam2pat
#47
vinodsinghjnu
closed
1 year ago
2
genome "liftover" for pat format
#46
NikolausMandlburger
closed
1 month ago
4
groups file format
#45
assafgrw
closed
1 year ago
1
find_markers for RRBS
#44
AndriesDeKoker
closed
1 year ago
9
About defining cell-type-specific hypermethylated sites.
#43
GleeenSIBS
closed
1 year ago
1
Missing last CPG site in chromosome
#42
linhxxx
closed
1 year ago
1
Missing last CPG site in chromosome
#41
linhxxx
closed
1 year ago
1
Docker
#39
GatKrieger
closed
1 year ago
1
Non-standard 1-based start position in bed files
#37
GWW
opened
1 year ago
0
find_markers error
#34
dengyihan1464
closed
1 year ago
2
Issue when collapsing beta files to the blocks
#33
avielmiluz
closed
1 year ago
1
init_genome error
#31
lingchuanmeixi
closed
1 year ago
4
convert .fractional.bw data to pat or beta
#30
avilella
opened
1 year ago
0
vis heatmap as a file export (pdf, etc.)
#29
avilella
closed
1 year ago
3
convert 450k data to beta or pat
#28
avilella
closed
1 month ago
1
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