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And refine def
(these are implicitly promoter proximal because the def already mentions promoter, this is just more precise)
Ace2_UAS
Update def: An RNA polymerase II *proximal* promoter element
…
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Running the quick-start fasta files directly following a conda install gives the following error:
```
FeGenie.py -bin_dir test_pao1/ -bin_ext txt -t 1
checking arguments
.
.
.
All required ar…
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Hi Mette,
I run a code like this TOBIAS BINDetect --motifs /Users/xiaohan/Desktop/diffbind/jaspar.txt --signals /Users/xiaohan/Desktop/diffbind/atacorrect_test/ZR_corrected.bw /Users/xiaohan/Desktop/…
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Molecular Function
Definition (GO:0003695 GONUTS page)
Interacting selectively and non-covalently with DNA in a random coil configuration.
Secondary IDs
GO:0016017
This is a strange term beca…
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Summary of email to 14 Feb 2019
Astrid:
>Did we get suggestions yet from the ‘gene regulatory region’-experts on which ontological terms and hierarchies (DAGs) we should create for the regulatory …
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current def
The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and …
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When I try to run Ananse binding using the following code:
ananse binding \
-r /home/jsmits/ananse/KC_enh_int.bed \
-o /home/jsmits/ananse/binding_KC.txt \
-a /home/jsmits/tools/GRCh38.p13/GRCh3…
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Hi, I'm trying to install atacworks on a cluster where I do not have root permissions. I have installed all the dependencies and tried to do `pip install .`, but I ran into this error
`ERROR: Coul…
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Hello,
Thanks for creating BiFET.
After creating the two GRanges objects as specified in the tutorial (only difference being that I used HINT instead of PIQ), I came across this error when runn…
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is this correct?
teb1 GO:0061586 positive regulation of transcription by transcription factor localization IMP has_input ams2
if so which phenotype(s)?