NVIDIA-Genomics-Research AtacWorks issues

NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data

https://clara-parabricks.github.io/AtacWorks/

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Error: `torch.cuda.OutOfMemoryError: CUDA out of memory`

#251 rrchai closed 8 months ago
1
PermissionError: [Errno 13] Permission denied: 'bedGraphToBigWig'

#250 AbbyQiayi opened 1 year ago
0
Could not find a version that satisfies the requirement torchvision==0.3.0 (from atacworks)

#249 skr3178 opened 1 year ago
0
Error running atacworks train

#248 albertdyu opened 2 years ago
2
Tutorial 1 is recursive?

#247 albertdyu opened 2 years ago
1
ConnectionResetError: [Errno 104] Connection reset by peer

#246 hhvu0102 opened 2 years ago
0
Removing hard-set versions from requirements.txt to be more compatible with RAPIDS

#245 cjnolet opened 2 years ago
2
error message needing help

#244 elffairy90 opened 2 years ago
1
mouse reference genome

#243 elffairy90 closed 3 years ago
1
[gpuCI] Forward-merge master to dev-v0.4.0

#242 GPUtester opened 3 years ago
1
Update Requirements.txt - master branch

#241 ohadmo closed 3 years ago
0
Update dependencies

#240 ntadimeti closed 3 years ago
0
mouse reference

#239 elffairy90 closed 3 years ago
2
Update requirements.txt

#238 ntadimeti closed 3 years ago
2
Atacworks stuck at "waiting for writter to finish..."

#237 rochevin opened 3 years ago
3
Pretrained model for bulk low-quality data

#236 avantikalal opened 3 years ago
6
What does the 6 kb mean?

#235 YichaoOU opened 3 years ago
3
Update citation

#234 avantikalal closed 3 years ago
0
error in pip install -r requirments.txt

#233 elffairy90 opened 3 years ago
1
Error when passing directories for training

#232 plantformatics closed 3 years ago
1
WIP: Enable reading config files output by atacworks

#231 ntadimeti opened 3 years ago
1
WIP: Combine tile functions in utils.py

#230 ntadimeti closed 3 years ago
1
Sort the files in dir to ensure paired readings

#229 ntadimeti closed 3 years ago
1
name h5 file based on noisybw instead of cleanbw

#228 ntadimeti closed 3 years ago
3
WIP: Update versions of all dependencies

#227 ntadimeti opened 3 years ago
1
Update scikit-learn version

#226 ntadimeti closed 3 years ago
0
Update atacworks dependencies to scikit-learn 0.23.2

#225 avantikalal closed 3 years ago
1
Add rapids atacworks example

#224 ntadimeti closed 3 years ago
0
Update atacworks dependencies to latest stable versions

#223 ntadimeti opened 3 years ago
0
Update documentation

#222 ntadimeti closed 3 years ago
0
AtacWorks errors on custom data

#221 asundaresan1 closed 3 years ago
15
[gpuCI] Auto-merge master to dev-v0.4.0 [skip ci]

#220 GPUtester closed 3 years ago
1
Soften the requirements

#219 ntadimeti closed 3 years ago
0
Add compatibility version specifier

#218 ntadimeti closed 3 years ago
1
h5 file naming

#217 avantikalal closed 3 years ago
0
files not read in sorted order

#216 ntadimeti closed 3 years ago
0
fix evaluation

#215 ntadimeti closed 3 years ago
0
Fix batch size arg

#214 ntadimeti closed 3 years ago
0
Version promotion scripts for automatic release job

#213 ohadmo closed 3 years ago
0
atacworks inference getting stuck at writing stage

#212 ntadimeti closed 3 years ago
0
scanpy installation conflicts with atacworks

#211 ntadimeti closed 3 years ago
0
Fix release version

#210 ntadimeti closed 3 years ago
2
Add unit tests for data loader

#209 ntadimeti closed 3 years ago
1
Fix train dataloader

#208 ntadimeti closed 3 years ago
0
In training, same sample is being stored per batch.

#207 ntadimeti closed 3 years ago
0
Update defaults

#206 avantikalal closed 3 years ago
0
Add new docker instructions

#205 ntadimeti closed 3 years ago
3
Fix wheel package location

#204 ntadimeti closed 3 years ago
0
Merge dev-v0.3.0 to master

#203 ntadimeti closed 3 years ago
1
Update final details

#202 ntadimeti closed 3 years ago
0