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Hello, I am following the [preprocessing notebook](https://github.com/YosefLab/Cassiopeia/blob/refactor/notebooks/preprocess.ipynb) in the refactor branch with my own GESTALT data. I believe it has be…
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Hi,
I found another bug (I think). This time I have working with the onSelection option, I tried to get the name of my tag (in the example below: "test2 with long text inside"). But, the object doesn…
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Hi CRISPResso team,
Firstly, thank you for providing this useful software!
I am analysing 300 bp paired end reads from a CRISPR/Cas9 experiment targeting the exon of a single gene. I have succes…
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Hi, My name is Fangfei and I'm interested in applying TRiCoLOR on a Nanopore sequencing data to find repeats. However I met a problem with the SENSoR step. Could you help me with it?
The error messa…
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Kind greetings @guanjue,
This is such an AWESOME TOOL which I discovered after looking at `IDEAS` and `IDEAS_2018`!
I'm interested in applying it to 100's of samples worth of data related to Hun…
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**Expected behavior**
During subsequent runs, I would expect to find different random seeds being used making it rare to see the same cell in multiple samples from `adata`.
**Observed behavior**
…
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Hi,
Lancet generates in output the list of variants in VCF format (v4.1). All variants (SNVs and indels either shared, specific to the tumor, or specific to the normal) are exported in output. Follow…
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Here are two papers, one on protein therapeutics and one review. I am currently reading two additional papers; one to do with cell lysis through quorum sensing and one which is talking about automatio…
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Hello, 遇到一个问题，用pairwise_termsim 处理数据的时候出现了这样一个错误:
```
Error in (function (cl, name, valueClass) :
‘termsim’ is not a slot in class “enrichResult”
```
代码如下：
```
> ego class(ego)
[1] "enri…