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A recent survey of ECO found 10 terms that lacked definitions. A search of issues revealed that definitions for these terms have not been previously discussed.
Tentative definitions proposals foll…
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For the moment there's only an example for a heterogenous model. We need some example data for homogenous networks as well, so we can test the loo in these cases.
@MichielStock any ideas?
JoFAM updated
6 years ago
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Alex
Creating the last network (about Line 401) in the CFN_CCCN_FigureVignette_updated.Rmd file that you sent me gives the error:
> net.suid sessionInfo()
R version 3.5.0 (2018-04-23)
Pl…
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Maybe start looking here:
https://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL521
also maybe do some testing with QueryChembl.py
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is mapping to
FK506 binding
which is not appropriate for yeasts which don't have an immune sysyem.
There should be a taxon filter here if not already
Reported by: ValWood
Original Ticket: [geneont…
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Currently, we have a series of clients for different services that implement smart apis. We have e.g. a biolink module, a pharos module, etc. Given the correct annotations for a smart api (semantic …
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I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago
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I have a TSV file training_abstracts.tsv when I use the function:
‘def test1():
with open('F:\\small paper\\ner\\data_file\\training_abstracts.tsv', 'r', encoding='utf-8') as f1:
line =…
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I propose that we add these sources now:
**YES:**
- [x] http://myvariant.info/, variant data
- [x] http://www.drugbank.ca/, drug & drug target data
- [x] https://www.ebi.ac.uk/chembl/, database …
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