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We started with issue #154 and thought that would have addressed our issues but, alas, setting a index in AWS S3 does not solve the problem.
```python
import os
import boto3
from cyvcf2 import V…
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I know this is a known issue, but I don't see it here for Windows 10 users with Python 3.7.
Using Anaconda and `pip install nanopack` the process collects all the packages, then I get the following e…
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See https://github.com/samtools/htslib/issues/593#issue-259627325 for context.
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See https://github.com/samtools/htslib/issues/593#issue-259627325 for context.
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## Description
FileNotFoundError: [Errno 2] No such file or directory: './data/write_test_rg.bam.bai'
While a new file `-@ 4` has been generated. This is a known bug when generating bam.bai file wit…
zztin updated
2 years ago
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I had to turn off multithreaded GAM read because this would break on Mac:
```
vg construct -r test/1mb1kgp/z.fa -v test/1mb1kgp/z.vcf.gz > z.vg
vg sim -n 10000 -s 23 -a -x z.vg > sim.gam
# This fails
…
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- [x] Build pkgs
- [x] Release to devel channel
- [x] Test
- [ ] Release to prod channel
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Hi,
I have been trying to install BamM. I am giving it the paths for libraries I needed to install manually. I get this results in the installation process:
sudo python setup.py install --with-libh…
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During `make` of pufferfish I'm getting the following error. You can see just above the error it does the presence and sanity checks for `zlib.h` and all good, so something wrong with an include path …
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I am interested in deriving the avg_distance_to_effective_5p_end value utilizing the data from the avg_distance_to_effective_3p_end column.
Is there any plan to provide the avg_distance_to_effectiv…