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We should have a return (it would make sense if this was returned from sma) if a motif cannot be found in a given network.
This would make for a much better UI in show_motif and explore_motifs, bec…
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Dear developer,
I tried to install strucmotif-search and encoutered some errors because the pom.xml files point to a version that does not exist:
0.9.15-SNAPSHOT
After changing to 0.9…
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Surprisingly,
```r
> is.directed(ml_net)
[1] TRUE
```
I think ``m̀l_net`` shouldn't be directed. Please check.
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Thanks for the SCENIC, could I use the differential expression genes as the input of the SCENIC?thank you
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Make a Shiny app to explore the Motif zoo:
Some reference
https://deanattali.com/2015/04/21/r-package-shiny-app/
That is very helpful. I am going to delete the show_3_motifs and show_4_motifs. …
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Can you add genome MN908947.3 on the list of available genomes for SARS-CoV-2? A number of us are using the ARTIC reference genome (https://github.com/artic-network/artic-ncov2019/blob/master/primer_…
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Use the emoji reactions on this issue to vote for your preference
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**Describe the bug**
Hi, I got a ValueError when runninig "pyscenic ctx". I follow the Nature Protocol and download the ranking database in feather format. The list of TF I used is SCENICprotocol/exa…
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We should have a function that displays the motif(s) based on their name, for convenience. At the moment, show_3_motifs or show_4_motifs just load images of all possible configurations from inst, but …
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This is a re-post of the issue originally posted at https://github.com/aertslab/scenic-nf/issues/3.
I now switched to the newer version of the pipeline (SCENICprotocol) and the problem persists.
…