-
I tried installing the software on my local system as I need to generate secondary structure of many RNAs. I am installing from source code provided on developers webpage because this github repositor…
-
I'm seeing a bug where large arcs from a DP (here converted to ".dp.bp") file (see [IGV-supported RNA Secondary Structure Formats](https://software.broadinstitute.org/software/igv/RNAsecStructure)) cr…
-
Starting from e.g: https://github.com/hussius/deeplearning-biology or https://github.com/greenelab/deep-review select a set of models, rebuild and re-train them in Keras.
## Spreadsheet of models t…
-
I made a new slim compilation file
https://docs.google.com/document/d/1LVu3e8R2GmqS63KhAcjSbkBMngJ-y0Nd8uyBuWw0gFk/edit
I'm not sure that I got everything in it.
This is the master list.
The…
-
Hello,
I think anti-termination is a prokaryotic-specific process. Interestingly, the assay for anti-termination activity of RBGA5 was done in E. coli. The authors conclude that "These results dem…
-
1) need to figure out and research ALL possible output in column I "Variant_Classification" and "Ensembl_so_term" column DU. please list them here in this ticket.
2) This information can be used t…
-
- it is good to start reading the section of "**Materials and methods**" with focus on _**in silico**_ analysis
- please use the sequence (B-Actin Arabian Camel) forwarded to you to identify the foll…
-
A search for ['RNA structure prediction'](https://bio.tools/?page=1&q=%27RNA%20structure%20prediction%27&sort=score&ord=asc) yields 25 tools (at least that's what's shown on the right end of the searc…
-
based on: https://gatkforums.broadinstitute.org/gatk/discussion/8815/oncotator-variant-classification-and-secondary-variant-classification
-
Hello,
I would like to request a new term for small RNA (sRNA). They are