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> Created by **@alexanderjsummers** on 2016-01-13 17:09
> Last updated on 2018-06-09 12:08
Because of a lack of appropriate triggers (at least for composite.sil), the examples composite.sil and bsear…
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Hello,
I am running CalliNGS workflow using AWS BATCH on AWS Sagemaker using AWS s3 storage drives. I am using the following containerOverides:
```
containerOverrides={
'command': [
…
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I was reading through the draft of the SeqCol specification. We have an envisioned use case that complements federated VRS, that would benefit from the notion of a unique digest that represents a sequ…
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Dear all,
I am trying to use vg construct to make a vgraph from a genome (bgzipped and samtools faidxed fasta file) and a variant file (gzipped and tabixed vcf file).
I am using vg version v1.17…
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Hi,
Due to the nature of our system we are unable to acquire the parents of our sequenced individual, we sequencing a lot of children data.
What should I do to build hap-kmer using these children…
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Hi,
I would like to run ranbow to phase a short part of a potato genome. The input I have is a set of Hifi/CCS reads, a VCF file (which was not created from the CCS reads, but from another dataset …
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We have 41 complete, closed, Salmonella sequences (40 unique). For a
reference to get annotations, we exported one (1956) as both a genbank file,
and a fasta file. Looking at the output in gingr (se…
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Working with several different sequencing runs of various qualities I am trying to develop intuition for what reasonable quality filtration parameters are in the function `filterAndTrim`. The relevant…
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Hello,
I'm happy to have stumbled across this project, it's very cool! I'm interested in contributing, and would like to apply this dataset for public health genomic surveillance
I have been int…
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Hi,
I noticed you currently use version 4.3 of the VCF specification for tandem repeats. However, version 4.3 does not provide guidelines on handling tandem repeats, whereas version 4.4 does. Do y…