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There is a notification appearing all the time when loading a spatial dataset:
```
Found more than one class "SpatialImage" in cache; using the first, from namespace 'SpatialExperiment'
Also def…
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When I try to upload 10X visium data with the following code:
`se
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/BodenmillerGroup/cytoviewer
Confirm the following…
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HI, very interested in this approach/tool. However, the provided nanostring/Geomxtools work with a different class object (ExpressionSet, see https://bioconductor.org/packages/release/bioc/vignettes/G…
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__Problem Statement__: When calling `plotSpots` using a `SpatialExperiment` object that contains multiple samples, `plotSpots` will not create a panel of individual spot plots. Instead, it overlays al…
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I recently came across your preprint _Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST_. It is a great novel method and seems to have great …
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I am having this issue of my jupyter notebook not being able to find the GenomeInfoDbData package even though it is already installed in my conda environment. Note: I am trying to use this package as …
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Mosaic data is entered as a list of matrices where each matrix is the assay of a given dataset, perhaps write a function to take in list of either SCE or MAE objects with argument identifying assays t…
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Hi there,
is it possible to install your package for R version = 4.2.0`
Many Thanks
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Hi, I am wondering why, with respect to the SingleCellExperiment, the $ operator does not list the available colData entries any more but rather the rownames? I see that one can still call colData ent…