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Dear Heyden,
I am quite interested in both CATCH and your paper on Nature Biotech (https://www.nature.com/articles/s41587-018-0006-x#MOESM3) as a method to define custom probes for viruses. CATCH i…
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Hello,
I get scaffolds showing up at the end of my assembly that contain a single N as their sequence.
eg.
>scaffold4685,1,f4740Z1
N
This is in the *.scaffold.fa file after running arks+LINK…
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I am running the installation script on top of a 1.1.4a installation and see
```
List of genomes to get (from the config file at '{'genomes': [{'dbkey': 'hg19', 'name': 'Human (hg19)', 'indexes': …
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**Submitting author:** @urmi-21 (Urminder Singh)
**Repository:** https://github.com/urmi-21/ORIS
**Version:** v1.0
**Editor:** @csoneson
**Reviewers:** @jdeligt, @holtgrewe
**Author instructions**
…
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A generic hg38 error on an upgrade (see below). Any insight much appreciated thanks!
root@ip-10-0-0-44 bcbioadmin]# bcbio_nextgen.py upgrade --data --genomes hg38 --aligners hisat2 --aligners star…
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In https://github.com/intel/ipmctl/pull/43 I added some logic to not error out when calling unsupported commands. I believe I found a related issue.
In the latest release v01.00.00.3262, `DIMM_INFO…
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See https://github.com/Ensembl/ensembl-vep/issues/375. At this point here fails because all these connections are blocked by my institution's firewall.
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### I used the following command to install dockerized bcbio-nextgen:
### bcbio_vm.py --datadir=~/install/bcbio_vm/data install --data --tools --genomes GRCh37 --aligners bwa
### I have googled si…
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Hi, I'm a big fan of invidio.us, and I hope this RFC can help in getting it more popular.
The front page (top videos) is full of videos by extreme right channels, among others "Paul Joseph Watson"…
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Hi, I'm getting an error while installing bcbio_vm data for genome hg19:
```
localhost] local: export PATH=/usr/local/bin:$PATH && export RTG_JAVA_OPTS='-Xms1g' && export RTG_MEM=2g && rtg format …