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Would there be any support for creating a Python module that creates template-BioSQL databases?
Is this technology too old? Or is there a better way to do this already?
If people are interested…
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Hello.
I know `emirge` has only been tested on versions 0.12* or so of `bowtie`. But, we had no issues running it up to version 1.1.2 of `bowtie`. A recent upgrade to `bowtie 1.2`, however, broke `…
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```
pysam/libchtslib.c: In function '__Pyx_PyCFunction_FastCall':
pysam/libchtslib.c:15077:12: error: too many arguments to function '(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_…
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https://ncbiinsights.ncbi.nlm.nih.gov/2018/12/03/adapting-flatfile-parsers-genbank-new-accession-formats/
"the LOCUS line, includes the “Locus Name” (usually identical to the accession number), whi…
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We have for some time run the continuous integration tests on TravisCI via the Python tool ``coverage`` and uploaded the metrics to https://codecov.io/github/biopython/biopython/
For Biopython 1.69…
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Hi thanks for this great software. While using this I am unable to start with the continuous error of "Error reading fasta sequences - please check input files!". This error also occurring with test-s…
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Supplying option "D" for Down assigns the Up calculation through 'EXP_HSE_B_U' and the other way around:
``` javascript
elif options.exp[0] == "H" and options.exp[3] == "B":
hse = HSExposureCB(m,…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
kblin updated
4 years ago
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Hello - just cannot get arpeggio to work, and would much appreciate some help! Thanks Shoumo
Installation as follows:
conda create -n arpeggio-env python=3.7 anaconda
conda activate arpeggio-env
…
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The NCBI is phasing out GI numbers per this [announcement](https://www.ncbi.nlm.nih.gov/news/03-02-2016-phase-out-of-GI-numbers/). The code works for now but [`vdb.parse`](https://github.com/blab/next…