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Hi, I'm using the following to produce a core heat map:
library(microbiome)
pseq.core
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Hi, I'm trying to make a heat map of the core microbiome, using the following code:
library(microbiome)
pseq
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Depends/related to #113
This would involve plugin-level, action-level, and potentially even transformer/format-level citations.
Once recorded, q2view or other interfaces could demonstrate what …
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I have tried with no success to set up the local building test.
With circleci build, I do not seem to have gcc in the build environment. Here is an example with fastree recipe incremented by 1.
`…
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As with plot_composition. ``plot_core`` gives OTU id instead of taxonomic identities. Tested on DynamicsIBD dataset. The rownames in otu_table when out of seq based approach has OTU ids and hence the …
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Error received when trying to run global() on phyloseq object:
`Error in colSums(xcomp[cm, ]) : 'x' must be an array of at least two dimensions`
I think I traced down the problem. It seems that c…
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GitHub repository of the package we wish to submit to _Bioconductor_
- Repository: https://github.com/microbiome/microbiome
Note: this is a resubmission of the microbiome package in Bioconductor a…
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For downstream analysis, such as e.g. enrichment analysis with the EnrichmentBrowser, it would be great if these operation could be reversed.
This means two functions `MRexperiment2ExpressionSet` and…
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I'm in the process of writing a user recipe for [Plots.jl](https://github.com/JuliaPlots/Plots.jl) to enable plotting of `Hclust` [see here](https://github.com/JuliaPlots/StatPlots.jl/issues/73). Gene…
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Hi,
### Setup
Python 3.6.1 |Anaconda 4.4.0 (64-bit)| (default, May 11 2017, 13:09:58) [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]
CPython
Linux-4.4.0-97-generic-x86_64-with-debian-stretch-sid
Biop…