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I am trying to import a v1.0.0 .biom file to Qiime 2. The file was created in R using the biomformat package.
The biom file includes sample metadata and taxonomic information.
The biom file looks …
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The documentation is easily readable to humans. Thinking about machine-readable concept would be nice to have a file containing the JSON data model schema because markdown isn't a good structure to do…
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Since I don't have permissions right now:
- The CyAN project by various US government agencies looks to be working on a bunch of relevant things, and has good information about data, tools, and wha…
jayqi updated
7 years ago
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At a certain point, I am told by the Makefile to `Go to http://phylot.biobyte.de/ and generate tree from data/tree/ncbi_ids.clean.for_phyloT. Press any key to continue once you've added the tree file …
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When reading `TaxonomyFormat` with any of the transformers, the first line is assumed to be a (non-comment) header, followed by the taxonomy mapping lines. The sniffer is very lenient and only cares t…
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Only in metazoa? (possibly) never in fungi (definitely)
Note, some of these might be better fixed by having a “multicellular organismal process” parent which would automatically pull in the metazoan …
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This is a proposed anomaly.
This anomaly would only occur on asteroids, preferably ones without a deposit of any kind already.
Upon discovery:
**Unusual Energy Readings**
_“Preliminary scans of [Ast…
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Runing a hmsc in a overPoisson family gives the following error:
```
Error in glm.fit(x = c(26.3, 24.6, 18.9, 21.6, 35.2, 29.4, 42.2, 25.3, :
NA/NaN/Inf in 'x'
```
runing a parameter esti…
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Hello!
I tried to run the hmsc function for a overdispersed Poisson family "overPoisson", however the function throws the following error:
Error in mcmcOverPoissonXLatent(Y, Ylatent, X, Random, …
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A possible approach to modeling development of the C. elegans embryo
Background:
I propose to model embryological development in C. elegans by beginning with a simpler problem - plant development - t…